| Literature DB >> 31565105 |
Ke Huang1, Patrick John Kelly2, Jilei Zhang3, Yi Yang1, Weiguo Liu4, Anwar Kalalah5, Chengming Wang1,5.
Abstract
Bartonella are vector-borne hemotropic bacteria that infect a wide variety of hosts, including people. While there are PCR assays that can identify individual or groups of Bartonella, there is no reliable molecular method to simultaneously detect all species while maintaining genus specificity and sensitivity. By comparing highly conserved 16S rRNA sequences of the better-recognized Bartonella spp. on GenBank, we selected primers and probes for a genus-specific pan-Bartonella FRET-qPCR. Then, a gltA-based Bartonella PCR was established by selecting primers for a highly variable region of gltA, of which the sequenced amplicons could identify individual Bartonella spp. The pan-Bartonella FRET-qPCR did not detect negative controls (Brucella spp., Anaplasma spp., Rickettsia spp., Coxiella burnetii, and Wolbachia) but reliably detected as few as two copies of the positive control (Bartonella henselae) per reaction. There was complete agreement between the pan-Bartonella FRET-qPCR and the gltA-based Bartonella PCR in detecting Bartonella in convenience test samples from China and St. Kitts: cats (26%; 81/310), Ctenocephalides felis (20%; 12/60), cattle (24%; 23/98), and donkeys (4%; 1/20). Sequencing of the gltA-based Bartonella PCR products revealed B. henselae (70%; 57/81) and B. clarridgeiae (30%; 24/81) in cats and C. felis (67%; 8/12, and 33%; 4/12, respectively) and B. bovis in cattle (23.5%; 23/98) and donkeys (4.0%; 1/24). The pan-Bartonella FRET-qPCR and gltA-based Bartonella PCR we developed are highly sensitive and specific in detecting recognized Bartonella spp. in a single reaction. The pan-Bartonella FRET-qPCR is convenient requiring no gel electrophoresis and providing copy numbers, while the gltA-based Bartonella PCR reliably differentiates individual Bartonella species. The use of these PCRs should greatly facilitate large-scale surveillance studies and the diagnosis of infections in clinical samples.Entities:
Year: 2019 PMID: 31565105 PMCID: PMC6745129 DOI: 10.1155/2019/3209013
Source DB: PubMed Journal: Can J Infect Dis Med Microbiol ISSN: 1712-9532 Impact factor: 2.471
Figure 1Alignment of oligonucleotides for the pan-Bartonella FRET-qPCR based on the 16S rRNA used in this study. Primers and probes are shown at the top of the boxes. Dots indicate nucleotides identical to primers and probes, and dashes denote absence of the nucleotide. The upstream primers and two probes are used as the indicated sequences, while the downstream primer is used as the antisense oligonucleotide. The designed oligonucleotides show minimum mismatching with Bartonella spp. (0 mismatches with 14 species, 1 mismatch with 3 species, 2 mismatches with 1 species, and 4 mismatches with 2 species) but 11–29 nucleotide mismatches with the related non-Bartonella species. The 6-FAM label is directly attached to the 3-terminal nucleotide of the fluorescein probe, and the LCRed-640 fluorescein label is added via a linker to the 5′ end of the LCRed-640 probe.
Figure 2Alignment of oligonucleotides for Bartonella PCR based on gltA used in this study. Two partial amplicons of polymorphic regions of Bartonella spp. based on gltA are shown. The base of B. henselae (L38987.1) shown at the top of the figure was complete with the coding sequences from 630 to 678 and 702 to 768. Dots indicate identical nucleotide sequence to that of B. henselae. Through the polymorphic region of Bartonella spp., different Bartonella species could be determined by genomic sequencing in this study. The number of nucleotide mismatches between B. henselae and other Bartonella species in the 116 polymorphic coding sequences is also noted (mismatch in coding sequences from 630 to 678 and 702 to 768 with about 5 and 23 nucleotides). In this polymorphic region, none of Babesia species had identical sequences.
Figure 3Molecular phylogenetic analysis of Bartonella spp. in this study. Distances and groupings of Bartonella spp. detected in this study (bold font) and reference Bartonella sequences from NCBI were determined by the maximum likelihood and Bayesian inference method with the MEGA version 6 software based on the gltA gene (439 bp). Bootstrap values were calculated using 500 replicates. Scale bar indicates a genetic distance of 0.02 nt substitutions per position.
Molecular prevalence of Bartonella in mammals.
| Mammal | Source | Positive pan- |
| Average copies/ml blood, or per flea |
|---|---|---|---|---|
| Cat ( | Beijing | 4/36, 11.1 | 4 | 105.60 |
| Shanghai | 2/36, 5.6 | 1 | 108.35 | |
| 1 | 105.48 | |||
| Guangdong | 3/20, 15.0 | 3 | 104.60 | |
| Yangzhou | 14/72, 19.4 | 11 | 106.36 | |
| 3 | 107.86 | |||
| St. Kitts | 58/146, 39.7 | 38 | 106.33 | |
| 20 | 106.65 | |||
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| Cattle ( | St. Kitts | 23/42, 54.8 | 23 | 106.03 |
| Yangzhou | 0/56, 0 | — | ||
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| Horse ( | St. Kitts | 0/24, 0 | — | |
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| Sheep ( | St. Kitts | 0/30, 0 | — | |
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| Donkey ( | St. Kitts | 0/4, 0 | — | |
| Hebei | 1/20, 5.0 | 1 | 105.44 | |
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| Yangzhou | 12/60, 20.0 | 8 | 102.88 |
| 4 | 107.01 | |||
Comparison of isolates identified in this study and similar sequences in GenBank by BLAST.
| Isolates identified in this study | Highly similar sequences in GenBank | ||||
|---|---|---|---|---|---|
|
| Gene accession # | Source/origin | Gene accession # | Source/origin | Mismatches |
|
| |||||
|
| KX668387 | Cats from China | JN646660 | Animals from New Caledonia | 0/405 |
| KX668389 | Cats from St. Kitts | KJ170241 | Domestic cats from Brazil | 1/397 | |
| KX668388 | Cats from St. Kitts | JN646660 | Animals from New Caledonia | 0/405 | |
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| KX668391 | Cats from St. Kitts | KJ170239 | Domestic cats from Brazil | 1/401 |
| KX668390 | Cats from China | KJ170239 | Domestic cats from Brazil | 0/401 | |
| KX668392 | Cats from St. Kitts | KJ170236 | Cats from animal shelters in Brazil | 0/401 | |
| KX668393 | Cats from St. Kitts | KC331017 | Cats from animal shelters in Brazil | 14/401 | |
| KX668394 | Cats from St. Kitts | KC331017 | Cats from animal shelters in Brazil | 4/402 | |
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| KX753675 | Donkey from China | KR733182 | Cattle from Malaysia | 0/409 |
| KX753676 | Cows from St. Kitts | KF199896 | Cattle from Guatemala | 0/409 | |
| KX753677 | Cows from St. Kitts | KF199897 | Cattle from Guatemala | 0/409 | |