Literature DB >> 31564612

Single-Cell and Population-Level Analyses Using Real-Time Kinetic Labeling Couples Proliferation and Cell Death Mechanisms.

Jesse D Gelles1, Jarvier N Mohammed1, Luis C Santos2, Diana Legarda3, Adrian T Ting4, Jerry E Chipuk5.   

Abstract

Quantifying cytostatic and cytotoxic outcomes are integral components of characterizing perturbagens used as research tools and in drug discovery pipelines. Furthermore, data-rich acquisition, coupled with robust methods for analysis, is required to properly assess the function and impact of these perturbagens. Here, we present a detailed and versatile method for single-cell and population-level analyses using real-time kinetic labeling (SPARKL). SPARKL integrates high-content live-cell imaging with automated detection and analysis of fluorescent reporters of cell death. We outline several examples of zero-handling, non-disruptive protocols for detailing cell death mechanisms and proliferation profiles. Additionally, we suggest several methods for mathematically analyzing these data to best utilize the collected kinetic data. Compared to traditional methods of detection and analysis, SPARKL is more sensitive, accurate, and high throughput while substantially eliminating sample processing and providing richer data.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  apoptosis; automated image analysis; cell death; ferroptosis; high-throughput; live-cell imaging; necroptosis; real-time assay

Mesh:

Year:  2019        PMID: 31564612      PMCID: PMC6810872          DOI: 10.1016/j.devcel.2019.08.016

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  55 in total

Review 1.  Holding RIPK1 on the Ubiquitin Leash in TNFR1 Signaling.

Authors:  Nieves Peltzer; Maurice Darding; Henning Walczak
Journal:  Trends Cell Biol       Date:  2016-02-11       Impact factor: 20.808

2.  Proapoptotic BAX and BAK: a requisite gateway to mitochondrial dysfunction and death.

Authors:  M C Wei; W X Zong; E H Cheng; T Lindsten; V Panoutsakopoulou; A J Ross; K A Roth; G R MacGregor; C B Thompson; S J Korsmeyer
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

3.  A novel heterodimeric cysteine protease is required for interleukin-1 beta processing in monocytes.

Authors:  N A Thornberry; H G Bull; J R Calaycay; K T Chapman; A D Howard; M J Kostura; D K Miller; S M Molineaux; J R Weidner; J Aunins
Journal:  Nature       Date:  1992-04-30       Impact factor: 49.962

Review 4.  Living with death: the evolution of the mitochondrial pathway of apoptosis in animals.

Authors:  A Oberst; C Bender; D R Green
Journal:  Cell Death Differ       Date:  2008-05-02       Impact factor: 15.828

Review 5.  The impact of non-genetic heterogeneity on cancer cell death.

Authors:  Zintis Inde; Scott J Dixon
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-12-18       Impact factor: 8.250

6.  An inhibitor of Bcl-2 family proteins induces regression of solid tumours.

Authors:  Tilman Oltersdorf; Steven W Elmore; Alexander R Shoemaker; Robert C Armstrong; David J Augeri; Barbara A Belli; Milan Bruncko; Thomas L Deckwerth; Jurgen Dinges; Philip J Hajduk; Mary K Joseph; Shinichi Kitada; Stanley J Korsmeyer; Aaron R Kunzer; Anthony Letai; Chi Li; Michael J Mitten; David G Nettesheim; ShiChung Ng; Paul M Nimmer; Jacqueline M O'Connor; Anatol Oleksijew; Andrew M Petros; John C Reed; Wang Shen; Stephen K Tahir; Craig B Thompson; Kevin J Tomaselli; Baole Wang; Michael D Wendt; Haichao Zhang; Stephen W Fesik; Saul H Rosenberg
Journal:  Nature       Date:  2005-05-15       Impact factor: 49.962

Review 7.  Necroptosis in development, inflammation and disease.

Authors:  Ricardo Weinlich; Andrew Oberst; Helen M Beere; Douglas R Green
Journal:  Nat Rev Mol Cell Biol       Date:  2016-12-21       Impact factor: 94.444

8.  Disparate cleavage of poly-(ADP-ribose)-polymerase (PARP) and a synthetic tetrapeptide, DEVD, by apoptotic cells.

Authors:  K Yu; C A Kennedy; M M O'Neill; R W Barton; R J Tatake
Journal:  Apoptosis       Date:  2001-06       Impact factor: 4.677

9.  Mixed lineage kinase domain-like protein MLKL causes necrotic membrane disruption upon phosphorylation by RIP3.

Authors:  Huayi Wang; Liming Sun; Lijing Su; Josep Rizo; Lei Liu; Li-Feng Wang; Fu-Sheng Wang; Xiaodong Wang
Journal:  Mol Cell       Date:  2014-04-03       Impact factor: 17.970

10.  Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs.

Authors:  Marc Hafner; Mario Niepel; Mirra Chung; Peter K Sorger
Journal:  Nat Methods       Date:  2016-05-02       Impact factor: 28.547

View more
  6 in total

1.  Immune dysregulation in SHARPIN-deficient mice is dependent on CYLD-mediated cell death.

Authors:  Rosalind L Ang; Mark Chan; Diana Legarda; John P Sundberg; Shao-Cong Sun; Virginia L Gillespie; Nicholas Chun; Peter S Heeger; Huabao Xiong; Sergio A Lira; Adrian T Ting
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-14       Impact factor: 12.779

2.  Cell death through the ages: The ICDS 25th Anniversary Meeting.

Authors:  Jarvier N Mohammed; Jesse D Gelles; Camila Rubio-Patiño; Madhavika N Serasinghe; Andrew P Trotta; Richard A Lockshin; Zahra Zakeri; Jerry E Chipuk
Journal:  FEBS J       Date:  2020-03-08       Impact factor: 5.542

3.  IFN-γ+ cytotoxic CD4+ T lymphocytes are involved in the pathogenesis of colitis induced by IL-23 and the food colorant Red 40.

Authors:  Lili Chen; Zhengxiang He; Bernardo S Reis; Jesse D Gelles; Jerry Edward Chipuk; Adrian T Ting; Julie A Spicer; Joseph A Trapani; Glaucia C Furtado; Sergio A Lira
Journal:  Cell Mol Immunol       Date:  2022-04-25       Impact factor: 22.096

4.  High-Throughput Cell Death Assays with Single-Cell and Population-Level Analyses Using Real-Time Kinetic Labeling (SPARKL).

Authors:  Jesse D Gelles; Jerry E Chipuk
Journal:  STAR Protoc       Date:  2020-06-03

5.  T cell-derived tumor necrosis factor induces cytotoxicity by activating RIPK1-dependent target cell death.

Authors:  Nicholas Chun; Rosalind L Ang; Mark Chan; Robert L Fairchild; William M Baldwin; Julian K Horwitz; Jesse D Gelles; Jerry Edward Chipuk; Michelle A Kelliher; Vasile I Pavlov; Yansui Li; Dirk Homann; Peter S Heeger; Adrian T Ting
Journal:  JCI Insight       Date:  2021-12-22

6.  Preclinical Drug Response Metric Based on Cellular Response Phenotype Provides Better Pharmacogenomic Variables with Phenotype Relevance.

Authors:  Sanghyun Kim; Sohyun Hwang
Journal:  Pharmaceuticals (Basel)       Date:  2021-12-17
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.