Literature DB >> 31556866

Lichenihabitans psoromatis gen. nov., sp. nov., a member of a novel lineage (Lichenihabitantaceae fam. nov.) within the order of Rhizobiales isolated from Antarctic lichen.

Hyun-Ju Noh1,2, Kiwoon Baek3,1, Chung Yeon Hwang2, Seung Chul Shin4, Soon Gyu Hong2, Yung Mi Lee2.   

Abstract

Two Gram-stain-negative, facultative anaerobic chemoheterotrophic, pink-coloured, rod-shaped and non-motile bacterial strains, PAMC 29128 and PAMC 29148T, were isolated from lichen. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strains PAMC 29128 and PAMC 29148T belong to lichen-associated Rhizobiales-1 (LAR1), an uncultured phylogenetic lineage of the order Rhizobiales and the most closely related genera were Methylocapsa (<93.9 %) and Methylosinus (<93.8 %). The results of phylogenomic and genomic relatedness analyses also showed that strains PAMC 29128 and PAMC 29148T were clearly distinguished from other species in the order Rhizobiales with average nucleotide identity values of <71.4 % and genome-to-genome distance values of <22.7 %. Genomic analysis revealed that strains PAMC 29128 and PAMC 29148T did not contain genes involved in atmospheric nitrogen fixation or utilization of carbon compounds such as methane and methanol. Strains PAMC 29128 and PAMC 29148T were able to utilize certain monosaccharides, disaccharides, sugar alcohols and other organic compounds as a sole carbon source. The major fatty acids (>10 %) were summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c; 33.7-39.7 %), summed feature 3 (C16 : 1 ω7c and/or C 16:1 ω6c; 25.2-25.4 %) and C19 :0 cyclo ω8c (11.9-15.4 %). The major respiratory quinone was Q-10. The genomic DNA G+C contents of PAMC 29128 and PAMC 29148T were 63.0 and 63.1 mol%, respectively. Their distinct phylogenetic position and some physiological characteristics support the proposal of Lichenihabitans gen. nov., with the type species Lichenihabitans psoromatis sp. nov. (type strain, PAMC 29148T=KCCM 43293T=JCM 33311T). Lichenihabitantaceae fam. nov. is also proposed.

Entities:  

Keywords:  Antarctica; Lichenihabitans psoromatis; new species; polyphasic taxonomy, lichen

Year:  2019        PMID: 31556866     DOI: 10.1099/ijsem.0.003695

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  4 in total

1.  What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen.

Authors:  Bastian Greshake Tzovaras; Francisca H I D Segers; Anne Bicker; Francesco Dal Grande; Jürgen Otte; Seyed Yahya Anvar; Thomas Hankeln; Imke Schmitt; Ingo Ebersberger
Journal:  Genome Biol Evol       Date:  2020-04-01       Impact factor: 3.416

Review 2.  3D biofilms: in search of the polysaccharides holding together lichen symbioses.

Authors:  Toby Spribille; Gulnara Tagirdzhanova; Spencer Goyette; Veera Tuovinen; Rebecca Case; Wesley F Zandberg
Journal:  FEMS Microbiol Lett       Date:  2020-03-01       Impact factor: 2.742

3.  Microbiome in Cladonia squamosa Is Vertically Stratified According to Microclimatic Conditions.

Authors:  Hyun-Ju Noh; Yung Mi Lee; Chae Haeng Park; Hong Kum Lee; Jang-Cheon Cho; Soon Gyu Hong
Journal:  Front Microbiol       Date:  2020-02-25       Impact factor: 5.640

4.  Diversity and Physiological Characteristics of Antarctic Lichens-Associated Bacteria.

Authors:  Hyun-Ju Noh; Yerin Park; Soon Gyu Hong; Yung Mi Lee
Journal:  Microorganisms       Date:  2021-03-15
  4 in total

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