Literature DB >> 31555993

Preliminary study on microeukaryotic community analysis using NGS technology to determine postmortem submersion interval (PMSI) in the drowned pig.

Cheol-Ho Hyun1, Heesoo Kim2, Seongho Ryu3, Won Kim4.   

Abstract

while several methods for determining postmortem submersion interval (PMSI) in drowning cases have been suggested, the estimation of PMSI remains difficult. Next-generation sequencing (NGS) technology enables simultaneous identification of multiple taxa from environmental samples. Although NGS has been applied to estimate time since death, this application has been mainly focused on terrestrial cases. As a case study, we investigated microeukaryotic biodiversity and community structures in submerged car bonnet and drowned pig using NGS technology. NGS analysis showed that the microeukaryotic biodiversity in pig carcass was relevantly lower than that in car bonnet. NGS results also revealed that water molds and algae were related to decomposition. Relative abundances of Filobasidium, Achlya, Saprolegnia, Hydrodicton, Lobosphaera, and Scenedesmus varied with decomposition period. This data indicated that these taxa might be useful as good indicators to estimate PMSI. This study showed microeukaryotic community analysis using NGS technology may help solve drowning cases in forensic investigation.

Entities:  

Keywords:  drowning; microeukaryotic community; microeukaryotic diversity; next-generation sequencing technology; postmortem submersion interval

Year:  2019        PMID: 31555993     DOI: 10.1007/s12275-019-9198-0

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  33 in total

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2.  Ecosystem properties and forest decline in contrasting long-term chronosequences.

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3.  Environmental DNA.

Authors:  Pierre Taberlet; Eric Coissac; Mehrdad Hajibabaei; Loren H Rieseberg
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4.  The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing.

Authors:  Jennifer L Pechal; Tawni L Crippen; M Eric Benbow; Aaron M Tarone; Scot Dowd; Jeffery K Tomberlin
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5.  The potential to determine a postmortem submersion interval based on algal/diatom diversity on decomposing mammalian carcasses in brackish ponds in Delaware.

Authors:  Kathryn A Zimmerman; John R Wallace
Journal:  J Forensic Sci       Date:  2008-07       Impact factor: 1.832

6.  Finding the needle in the haystack: differentiating "identical" twins in paternity testing and forensics by ultra-deep next generation sequencing.

Authors:  Jacqueline Weber-Lehmann; Elmar Schilling; Georg Gradl; Daniel C Richter; Jens Wiehler; Burkhard Rolf
Journal:  Forensic Sci Int Genet       Date:  2013-11-08       Impact factor: 4.882

7.  Microbial Signatures of Cadaver Gravesoil During Decomposition.

Authors:  Sheree J Finley; Jennifer L Pechal; M Eric Benbow; B K Robertson; Gulnaz T Javan
Journal:  Microb Ecol       Date:  2016-01-09       Impact factor: 4.552

8.  Pig decomposition in lotic aquatic systems: the potential use of algal growth in establishing a postmortem submersion interval (PMSI).

Authors:  James N Haefner; John R Wallace; Richard W Merritt
Journal:  J Forensic Sci       Date:  2004-03       Impact factor: 1.832

Review 9.  Application of next-generation sequencing technology in forensic science.

Authors:  Yaran Yang; Bingbing Xie; Jiangwei Yan
Journal:  Genomics Proteomics Bioinformatics       Date:  2014-10-14       Impact factor: 7.691

10.  phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

Authors:  Paul J McMurdie; Susan Holmes
Journal:  PLoS One       Date:  2013-04-22       Impact factor: 3.240

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  1 in total

1.  Bacterial Succession in Microbial Biofilm as a Potential Indicator for Postmortem Submersion Interval Estimation.

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Journal:  Front Microbiol       Date:  2022-07-22       Impact factor: 6.064

  1 in total

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