| Literature DB >> 31552266 |
Eileen Ruth S Torres1, Reed Hall1, Gerd Bobe2,3, Jaewoo Choi2,4, Soren Impey5, Carl Pelz5, Jonathan R Lindner6,7, Jan F Stevens2,4, Jacob Raber1,4,7,8.
Abstract
In this study, an untargeted metabolomics approach was used to assess the effects of proton irradiation (1 Gy of 150 MeV) on the metabolome and DNA methylation pattern in the murine hippocampus and left ventricle of the heart 22 weeks following exposure using an integrated metabolomics-DNA methylation analysis. The integrated metabolomics-DNA methylation analysis in both tissues revealed significant alterations in aminoacyl-tRNA biosynthesis, but the direction of change was tissue-dependent. Individual and total amino acid synthesis were downregulated in the left ventricle of proton-irradiated mice but were upregulated in the hippocampus of proton-irradiated mice. Amino acid tRNA synthetase methylation was mostly downregulated in the hippocampus of proton-irradiated mice, whereas no consistent methylation pattern was observed for amino acid tRNA synthetases in the left ventricle of proton-irradiated mice. Thus, proton irradiation causes long-term changes in the left ventricle and hippocampus in part through methylation-based epigenetic modifications. Integrated analysis of metabolomics and DNA methylation is a powerful approach to obtain converging evidence of pathways significantly affected. This in turn might identify biomarkers of the radiation response, help identify therapeutic targets, and assess the efficacy of mitigators directed at those targets to minimize, or even prevent detrimental long-term effects of proton irradiation on the heart and the brain.Entities:
Keywords: Parkinson's disease; hippocampus; integrated epigenetic metabolomics analysis; left ventricle; proton irradiation; radiation biomarkers
Year: 2019 PMID: 31552266 PMCID: PMC6746933 DOI: 10.3389/fmolb.2019.00077
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
Figure 1Heatmaps of metabolomics analyses of the hippocampus (A) and left ventricle (B) 22 weeks following proton and sham irradiation.
Figure 2Partial least squares discriminant analysis (PLS-DA) of (A) hippocampal tissue, (B) left ventricular tissue, and (C) the ratio of left ventricular tissue and hippocampal tissue discriminates between sham- and proton-irradiated mice. Signal intensities of 15 individual amino acids were scaled (Pareto scaling) and then analyzed using PLS-DA. The ellipses were drawn at 95% CI of normal distribution for a given group. Loading plots illustrate the proportion of variation accounted for by each component. Each number represents one mouse (1–4 for sham-irradiated mice, and 11–15 for proton-irradiated mice).
Figure 3Effects of proton irradiation on signal intensities of individual and total amino acids in (A) hippocampal tissue, (B) left ventricular tissue, and (C) the ratio of left ventricular tissue and hippocampal tissue in sham-, and proton-irradiated mice. Results are shown as % changes from sham-irradiated mice (median proton-irradiated mice/median sham-irradiated mice in % −100). Amino acids with a * signify a p ≤ 0.05 and amino acids with a + signify a 0.05 < p ≤ 0.10.