Literature DB >> 31550156

A Chemical Probe for Tudor Domain Protein Spindlin1 to Investigate Chromatin Function.

Vincent Fagan1,2, Catrine Johansson1,3, Carina Gileadi1,3, Octovia Monteiro1,2, James E Dunford3, Reshma Nibhani3, Martin Philpott3, Jessica Malzahn3, Graham Wells3, Ruth Faram3, Adam P Cribbs3, Nadia Halidi1,3, Fengling Li4, Irene Chau4, Holger Greschik5, Srikannathasan Velupillai1, Abdellah Allali-Hassani4, James Bennett1,2, Thomas Christott1,2, Charline Giroud1,2, Andrew M Lewis1,2, Kilian V M Huber1,2, Nick Athanasou3, Chas Bountra1, Manfred Jung6,7, Roland Schüle5, Masoud Vedadi4, Cheryl Arrowsmith4, Yan Xiong8, Jian Jin8, Oleg Fedorov1,2, Gillian Farnie1,3, Paul E Brennan1,2,9, Udo Oppermann1,3,6.   

Abstract

Modifications of histone tails, including lysine/arginine methylation, provide the basis of a "chromatin or histone code". Proteins that contain "reader" domains can bind to these modifications and form specific effector complexes, which ultimately mediate chromatin function. The spindlin1 (SPIN1) protein contains three Tudor methyllysine/arginine reader domains and was identified as a putative oncogene and transcriptional coactivator. Here we report a SPIN1 chemical probe inhibitor with low nanomolar in vitro activity, exquisite selectivity on a panel of methyl reader and writer proteins, and with submicromolar cellular activity. X-ray crystallography showed that this Tudor domain chemical probe simultaneously engages Tudor domains 1 and 2 via a bidentate binding mode. Small molecule inhibition and siRNA knockdown of SPIN1, as well as chemoproteomic studies, identified genes which are transcriptionally regulated by SPIN1 in squamous cell carcinoma and suggest that SPIN1 may have a role in cancer related inflammation and/or cancer metastasis.

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Year:  2019        PMID: 31550156     DOI: 10.1021/acs.jmedchem.9b00562

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  12 in total

Review 1.  Targeting epigenetic protein-protein interactions with small-molecule inhibitors.

Authors:  Brian M Linhares; Jolanta Grembecka; Tomasz Cierpicki
Journal:  Future Med Chem       Date:  2020-06-19       Impact factor: 3.808

Review 2.  Lysine methyltransferase inhibitors: where we are now.

Authors:  Alessandra Feoli; Monica Viviano; Alessandra Cipriano; Ciro Milite; Sabrina Castellano; Gianluca Sbardella
Journal:  RSC Chem Biol       Date:  2021-12-13

3.  Covalent labeling of a chromatin reader domain using proximity-reactive cyclic peptides.

Authors:  Meng Yao Zhang; Hyunjun Yang; Gloria Ortiz; Michael J Trnka; Nektaria Petronikolou; Alma L Burlingame; William F DeGrado; Danica Galonić Fujimori
Journal:  Chem Sci       Date:  2022-05-12       Impact factor: 9.969

4.  SPIN4 Is a Principal Endogenous Substrate of the E3 Ubiquitin Ligase DCAF16.

Authors:  Xiaoyu Zhang; Marvin Thielert; Haoxin Li; Benjamin F Cravatt
Journal:  Biochemistry       Date:  2021-02-26       Impact factor: 3.162

5.  Exploring aromatic cage flexibility of the histone methyllysine reader protein Spindlin1 and its impact on binding mode prediction: an in silico study.

Authors:  Chiara Luise; Dina Robaa; Wolfgang Sippl
Journal:  J Comput Aided Mol Des       Date:  2021-06-03       Impact factor: 3.686

6.  Discovery of an H3K36me3-Derived Peptidomimetic Ligand with Enhanced Affinity for Plant Homeodomain Finger Protein 1 (PHF1).

Authors:  Isabelle A Engelberg; Jiuyang Liu; Jacqueline L Norris-Drouin; Stephanie H Cholensky; Samantha A Ottavi; Stephen V Frye; Tatiana G Kutateladze; Lindsey I James
Journal:  J Med Chem       Date:  2021-05-17       Impact factor: 8.039

Review 7.  Improved methods for targeting epigenetic reader domains of acetylated and methylated lysine.

Authors:  Isabelle A Engelberg; Caroline A Foley; Lindsey I James; Stephen V Frye
Journal:  Curr Opin Chem Biol       Date:  2021-04-11       Impact factor: 8.972

8.  Driving integrative structural modeling with serial capture affinity purification.

Authors:  Xingyu Liu; Ying Zhang; Zhihui Wen; Yan Hao; Charles A S Banks; Jeffrey J Lange; Brian D Slaughter; Jay R Unruh; Laurence Florens; Susan M Abmayr; Jerry L Workman; Michael P Washburn
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

9.  Development of potent dimeric inhibitors of GAS41 YEATS domain.

Authors:  Dymytrii Listunov; Brian M Linhares; EunGi Kim; Alyssa Winkler; Miranda L Simes; Sidney Weaver; Hyo Je Cho; Alexandrea Rizo; Sergey Zolov; Venkateshwar G Keshamouni; Jolanta Grembecka; Tomasz Cierpicki
Journal:  Cell Chem Biol       Date:  2021-07-21       Impact factor: 8.116

10.  Structure-Based Design, Docking and Binding Free Energy Calculations of A366 Derivatives as Spindlin1 Inhibitors.

Authors:  Chiara Luise; Dina Robaa; Pierre Regenass; David Maurer; Dmytro Ostrovskyi; Ludwig Seifert; Johannes Bacher; Teresa Burgahn; Tobias Wagner; Johannes Seitz; Holger Greschik; Kwang-Su Park; Yan Xiong; Jian Jin; Roland Schüle; Bernhard Breit; Manfred Jung; Wolfgang Sippl
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

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