Literature DB >> 33852996

Improved methods for targeting epigenetic reader domains of acetylated and methylated lysine.

Isabelle A Engelberg1, Caroline A Foley1, Lindsey I James1, Stephen V Frye2.   

Abstract

Responsible for interpreting histone post-translational modifications, epigenetic reader proteins have emerged as novel therapeutic targets for a wide range of diseases. Chemical probes have been critical in enabling target validation studies and have led to translational advances in cancer and inflammation-related pathologies. Here, we present the most recently reported probes of reader proteins that recognize acylated and methylated lysine. We will discuss challenges associated with achieving potent antagonism of reader domains and review ongoing efforts to overcome these hurdles, focusing on targeting strategies including the use of peptidomimetic ligands, allosteric modulators, and protein degraders.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Acylated and methylated lysine; Allosteric modulators; Bromodomains; Chemical probes; Chromatin regulatory factors; Epigenetic reader proteins; Histone post-translational modifications; Peptidomimetic ligands; Protein degraders; Small-molecule antagonists

Mesh:

Substances:

Year:  2021        PMID: 33852996      PMCID: PMC8384657          DOI: 10.1016/j.cbpa.2021.03.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  84 in total

1.  Systematic identification of methyllysine-driven interactions for histone and nonhistone targets.

Authors:  Huadong Liu; Marek Galka; Aimee Iberg; Zezhou Wang; Lei Li; Courtney Voss; Xinfeng Jiang; Gilles Lajoie; Zhiping Huang; Mark T Bedford; Shawn S C Li
Journal:  J Proteome Res       Date:  2010-10-01       Impact factor: 4.466

Review 2.  Readers of histone modifications.

Authors:  Miyong Yun; Jun Wu; Jerry L Workman; Bing Li
Journal:  Cell Res       Date:  2011-03-22       Impact factor: 25.617

Review 3.  Epigenetic Determinants of Cancer.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

4.  Discovery of Benzo[cd]indol-2(1H)-ones and Pyrrolo[4,3,2-de]quinolin-2(1H)-ones as Bromodomain and Extra-Terminal Domain (BET) Inhibitors with Selectivity for the First Bromodomain with Potential High Efficiency against Acute Gouty Arthritis.

Authors:  Fei Jiang; Qinghua Hu; Zhimin Zhang; Hongmei Li; Huili Li; Dewei Zhang; Hanwen Li; Yu Ma; Jingjing Xu; Haifang Chen; Yong Cui; Yanle Zhi; Yanmin Zhang; Junyu Xu; Jiapeng Zhu; Tao Lu; Yadong Chen
Journal:  J Med Chem       Date:  2019-12-13       Impact factor: 7.446

5.  Spatially constrained tandem bromodomain inhibition bolsters sustained repression of BRD4 transcriptional activity for TNBC cell growth.

Authors:  Chunyan Ren; Guangtao Zhang; Fangbin Han; Shibo Fu; Yingdi Cao; Fan Zhang; Qiang Zhang; Jamel Meslamani; Yaoyao Xu; Donglei Ji; Lingling Cao; Qian Zhou; Ka-Lung Cheung; Rajal Sharma; Nicolas Babault; Zhengzi Yi; Weijia Zhang; Martin J Walsh; Lei Zeng; Ming-Ming Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-16       Impact factor: 11.205

6.  Discovery of a chemical probe for the L3MBTL3 methyllysine reader domain.

Authors:  Lindsey I James; Dalia Barsyte-Lovejoy; Nan Zhong; Liubov Krichevsky; Victoria K Korboukh; J Martin Herold; Christopher J MacNevin; Jacqueline L Norris; Cari A Sagum; Wolfram Tempel; Edyta Marcon; Hongbo Guo; Cen Gao; Xi-Ping Huang; Shili Duan; Andrew Emili; Jack F Greenblatt; Dmitri B Kireev; Jian Jin; William P Janzen; Peter J Brown; Mark T Bedford; Cheryl H Arrowsmith; Stephen V Frye
Journal:  Nat Chem Biol       Date:  2013-01-06       Impact factor: 15.040

7.  Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3.

Authors:  Jark Böttcher; David Dilworth; Ulrich Reiser; Ralph A Neumüller; Michael Schleicher; Mark Petronczki; Markus Zeeb; Nikolai Mischerikow; Abdellah Allali-Hassani; Magdalena M Szewczyk; Fengling Li; Steven Kennedy; Masoud Vedadi; Dalia Barsyte-Lovejoy; Peter J Brown; Kilian V M Huber; Catherine M Rogers; Carrow I Wells; Oleg Fedorov; Klaus Rumpel; Andreas Zoephel; Moriz Mayer; Tobias Wunberg; Dietrich Böse; Stephan Zahn; Heribert Arnhof; Helmut Berger; Christoph Reiser; Alexandra Hörmann; Teresa Krammer; Maja Corcokovic; Bernadette Sharps; Sandra Winkler; Daniela Häring; Xiao-Ling Cockcroft; Julian E Fuchs; Barbara Müllauer; Alexander Weiss-Puxbaum; Thomas Gerstberger; Guido Boehmelt; Christopher R Vakoc; Cheryl H Arrowsmith; Mark Pearson; Darryl B McConnell
Journal:  Nat Chem Biol       Date:  2019-07-08       Impact factor: 16.174

8.  ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia.

Authors:  Liling Wan; Hong Wen; Yuanyuan Li; Jie Lyu; Yuanxin Xi; Takayuki Hoshii; Julia K Joseph; Xiaolu Wang; Yong-Hwee E Loh; Michael A Erb; Amanda L Souza; James E Bradner; Li Shen; Wei Li; Haitao Li; C David Allis; Scott A Armstrong; Xiaobing Shi
Journal:  Nature       Date:  2017-03-01       Impact factor: 49.962

Review 9.  Reading More than Histones: The Prevalence of Nucleic Acid Binding among Reader Domains.

Authors:  Tyler M Weaver; Emma A Morrison; Catherine A Musselman
Journal:  Molecules       Date:  2018-10-12       Impact factor: 4.411

10.  A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1.

Authors:  Jacob I Stuckey; Bradley M Dickson; Nancy Cheng; Yanli Liu; Jacqueline L Norris; Stephanie H Cholensky; Wolfram Tempel; Su Qin; Katherine G Huber; Cari Sagum; Karynne Black; Fengling Li; Xi-Ping Huang; Bryan L Roth; Brandi M Baughman; Guillermo Senisterra; Samantha G Pattenden; Masoud Vedadi; Peter J Brown; Mark T Bedford; Jinrong Min; Cheryl H Arrowsmith; Lindsey I James; Stephen V Frye
Journal:  Nat Chem Biol       Date:  2016-01-25       Impact factor: 15.040

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  3 in total

1.  Covalent labeling of a chromatin reader domain using proximity-reactive cyclic peptides.

Authors:  Meng Yao Zhang; Hyunjun Yang; Gloria Ortiz; Michael J Trnka; Nektaria Petronikolou; Alma L Burlingame; William F DeGrado; Danica Galonić Fujimori
Journal:  Chem Sci       Date:  2022-05-12       Impact factor: 9.969

2.  A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity.

Authors:  Laura De Clerck; Maarten Dhaenens; Sigrid Verhelst; Bart Van Puyvelde; Sander Willems; Simon Daled; Senne Cornelis; Laura Corveleyn; Ewoud Willems; Dieter Deforce
Journal:  Sci Rep       Date:  2022-01-24       Impact factor: 4.379

Review 3.  "Reading" a new chapter in protozoan parasite transcriptional regulation.

Authors:  Krista Fleck; Malorie Nitz; Victoria Jeffers
Journal:  PLoS Pathog       Date:  2021-12-02       Impact factor: 6.823

  3 in total

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