Literature DB >> 31548646

A checklist for maximizing reproducibility of ecological niche models.

Xiao Feng1,2, Daniel S Park3, Cassondra Walker4, A Townsend Peterson5, Cory Merow6, Monica Papeş7.   

Abstract

Reporting specific modelling methods and metadata is essential to the reproducibility of ecological studies, yet guidelines rarely exist regarding what information should be noted. Here, we address this issue for ecological niche modelling or species distribution modelling, a rapidly developing toolset in ecology used across many aspects of biodiversity science. Our quantitative review of the recent literature reveals a general lack of sufficient information to fully reproduce the work. Over two-thirds of the examined studies neglected to report the version or access date of the underlying data, and only half reported model parameters. To address this problem, we propose adopting a checklist to guide studies in reporting at least the minimum information necessary for ecological niche modelling reproducibility, offering a straightforward way to balance efficiency and accuracy. We encourage the ecological niche modelling community, as well as journal reviewers and editors, to utilize and further develop this framework to facilitate and improve the reproducibility of future work. The proposed checklist framework is generalizable to other areas of ecology, especially those utilizing biodiversity data, environmental data and statistical modelling, and could also be adopted by a broader array of disciplines.

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Year:  2019        PMID: 31548646     DOI: 10.1038/s41559-019-0972-5

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  38 in total

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Journal:  New Phytol       Date:  2017-10-30       Impact factor: 10.151

6.  Genotypic variability enhances the reproducibility of an ecological study.

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Journal:  Nat Ecol Evol       Date:  2018-01-15       Impact factor: 15.460

Review 7.  Best practices in data analysis and sharing in neuroimaging using MRI.

Authors:  Thomas E Nichols; Samir Das; Simon B Eickhoff; Alan C Evans; Tristan Glatard; Michael Hanke; Nikolaus Kriegeskorte; Michael P Milham; Russell A Poldrack; Jean-Baptiste Poline; Erika Proal; Bertrand Thirion; David C Van Essen; Tonya White; B T Thomas Yeo
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Journal:  Sci Adv       Date:  2019-01-16       Impact factor: 14.136

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  8 in total

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