| Literature DB >> 31547007 |
Qianqian Xu1, Hongfei Ma2, Jinhui Fan3, Hai Yan4, Haiyang Zhang5, Chunhua Yin6, Xiaolu Liu7, Yang Liu8, Huasheng Wang9.
Abstract
Biodegradation is efficient for removing cyanobacterial toxins, such as microcystins (MCs) and nodularin (NOD). However, not all the microbial strains with the microcystin-biodegrading enzymes MlrA and MlrC could biodegrade NOD. Studies on genes and enzymes for biodegrading NOD can reveal the function and the biodegradation pathway of NOD. Based on successful cloning and expression of the USTB-05-A and USTB-05-C genes from Sphingopyxis sp. USTB-05, which are responsible for the biodegradation of MCs, the pathway for biodegrading NOD by these two enzymes was investigated in this study. The findings showed that the enzyme USTB-05-A converted cyclic NOD (m/z 825.4516) into its linear type as the first product by hydrolyzing the arginine and Adda peptide bond, and that USTB-05-C cut off the Adda and glutamic acid peptide bond of linearized NOD (m/z 843.4616) and produced dimeric Adda (m/z 663.4377) as the second product. Further, based on the homology modeling of enzyme USTB-05-A, site-directed mutants of USTB-05-A were constructed and seven crucial sites for enzyme USTB-05-A activity were found. A complete enzymatic mechanism for NOD biodegradation by USTB-05-A in the first step was proposed: glutamic acid 172 and histidine 205 activate a water molecule facilitating a nucleophilic attack on the arginine and Adda peptide bond of NOD; tryptophan 176 and tryptophan 201 contact the carboxylate side chain of glutamic acid 172 and accelerate the reaction rates; and histidine 260 and asparagine 264 function as an oxyanion hole to stabilize the transition states.Entities:
Keywords: activity site; biodegradation; enzyme; mlrA; nodularin; pathway
Year: 2019 PMID: 31547007 PMCID: PMC6832836 DOI: 10.3390/toxins11100549
Source DB: PubMed Journal: Toxins (Basel) ISSN: 2072-6651 Impact factor: 4.546
Figure 1HPLC profiles for nodularin (NOD) biodegradation by cell-free extracts (CEs) of recombinant pGEX-4T-1/USTB-05-A/BL21(DE3) and pET30a(+)/USTB-05-C/BL21(DE3) after the following times: (a) 0 h; (b) 12 h; (c) 13 h; (d) 24 h.
Figure 2The UV spectra profiles of NOD and its two products.
Figure 3Liquid chromatogram mass spectrum (LC-MS) profile of NOD and its products. (a) MS spectrum for NOD; (b) MS spectrum for product A; (c) MS/MS spectrum for product A; (d) MS spectrum for product B; (e) MS/MS spectrum for product B.
Figure 4NOD biodegradation kinetics by CEs from E. coli BL21 (DE3) cells transformed with USTB-05-A and USTB-05-A mutants.
Figure 5The suggested pathway for biodegrading NOD by recombinant enzymes USTB-05-A and USTB-05-C.
Experiment conditions of the treatments in brief.
| Treatment | Experiment Condition |
|---|---|
| Control group for treatment A | NOD + the CEs of pGEX-4T-1/BL21(DE3)* |
| Control group for treatment C | NOD + the CEs of pET30a(+)/BL21(DE3)** |
| Treatment A | NOD + USTB-05-A |
| Treatment C | NOD + USTB-05-C |
| Treatment AC | NOD + USTB-05-A, 12 h later, + USTB-05-C |
| Control group for treatment AC | NOD + USTB-05-A, 12 h later, + the CEs of pET30a(+)/BL21(DE3) |
* pGEX-4T-1/BL21(DE3) is the empty vector control for recombinant bacteria pGEX-4T-1/USTB-05-A /BL21(DE3). ** pET30a(+)/BL21(DE3) is the empty vector control for recombinant bacteria pET30a(+)/USTB-05-C/BL21(DE3).