Literature DB >> 31535331

Information theory unveils the evolution of tRNA identity elements in the three domains of life.

Gabriel S Zamudio1, Miryam Palacios-Pérez2, Marco V José3.   

Abstract

We determined the identity elements of each tRNA isoacceptor for the three domains of life: Eubacteria, Archaea, and Eukarya. Our analyses encompass the most updated and curated available databases using an information theory approach. We obtained a collection of identity clusters for each of the isoacceptors of the 20 canonical amino acids for the three major domains of life. The identity clusters for all isoacceptors are compared within and among the three domains to determine their pattern of differentiation and to shed light on the evolution of the identity elements.

Keywords:  Information theory; Three domains of life; tRNA evolution; tRNA identity elements

Mesh:

Substances:

Year:  2019        PMID: 31535331     DOI: 10.1007/s12064-019-00301-6

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  31 in total

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Journal:  Biochim Biophys Acta       Date:  1957-03

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Journal:  Science       Date:  1988-05-06       Impact factor: 47.728

5.  Structural evolution of Glycyl-tRNA synthetases alpha subunit and its implication in the initial organization of the decoding system.

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6.  Evolutionary Gain of Alanine Mischarging to Noncognate tRNAs with a G4:U69 Base Pair.

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Journal:  J Am Chem Soc       Date:  2016-09-26       Impact factor: 15.419

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Authors:  Satoshi Tamaki; Masaru Tomita; Haruo Suzuki; Akio Kanai
Journal:  Front Genet       Date:  2018-01-08       Impact factor: 4.599

Review 8.  tRNA Modifications: Impact on Structure and Thermal Adaptation.

Authors:  Christian Lorenz; Christina E Lünse; Mario Mörl
Journal:  Biomolecules       Date:  2017-04-04

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Authors:  Sergio Branciamore; Grigoriy Gogoshin; Massimo Di Giulio; Andrei S Rodin
Journal:  Life (Basel)       Date:  2018-02-08

10.  A chiral selectivity relaxed paralog of DTD for proofreading tRNA mischarging in Animalia.

Authors:  Santosh Kumar Kuncha; Mohd Mazeed; Raghvendra Singh; Bhavita Kattula; Satya Brata Routh; Rajan Sankaranarayanan
Journal:  Nat Commun       Date:  2018-02-06       Impact factor: 14.919

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  1 in total

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  1 in total

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