| Literature DB >> 31531369 |
Adam Maciejewski1, Michał J Kowalczyk2, Waldemar Herman3, Adam Czyżyk4, Marta Kowalska5, Ryszard Żaba2, Katarzyna Łącka1.
Abstract
PURPOSE: Vitamin D, besides its role in calcium-phosphorus metabolism, turned out to play a significant immunomodulating function. Until now four single nucleotide polymorphisms of vitamin D receptor gene (VDR), rs2228570 (FokI), rs1544410 (BsmI), rs7975232 (ApaI), and rs731236 (TaqI), have been studied in autoimmune thyroid disorders, with conflicting results. Another functional polymorphism of the VDR gene, rs11568820 (Cdx2), has been shown to influence the immune system, although it has not been studied for its association with autoimmune thyroiditis to date. Therefore, the study aimed to evaluate the association of these five VDR gene polymorphisms with susceptibility to autoimmune thyroiditis among Caucasian Polish population. A relationship between the studied polymorphisms and selected clinical features of the disease was additionally assessed.Entities:
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Year: 2019 PMID: 31531369 PMCID: PMC6719278 DOI: 10.1155/2019/8197580
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Patients and controls characteristic.
| AIT | Healthy controls | |
|---|---|---|
| n | 223 | 130 |
| Age (SD) [years] | 46.88 (13.50) | 35.42 (14.96) |
| Female to male ratio | 21.3:1 | 3.48:1 |
| Thyroid volume (SD) [ml] | 11.39 (8.80) | 10.22 (4.09) |
| TSH (SD) [mIU/l] | 2.01 (2.08) | 1.52 (0.49) |
| Levothyroxine dose (SD) [ | 1.19 (0.50) | - |
| Age at diagnosis (SD) [years] | 43.37 (14.57) | - |
| Follow-up time (IQR) [years] | 3 (1-6) | - |
| Elevated TPOAb [%] | 92.83 | none |
| Elevated TgAb [%] | 64.13 | none |
AIT: autoimmune thyroiditis.
Data are mean (SD, standard deviation), median (IQR, interquartile range), or percentage.
PCR conditions for genotyping of rs2228570 (FokI), rs1544410 (BsmI), rs7975232 (ApaI), and rs731236 (TaqI) VDR SNPs.
| SNP | Forward primer | Reverse primer | PCR conditions | Cycles | PCR product size (bp) | Enzyme | Digested products size (bp) |
|---|---|---|---|---|---|---|---|
| rs2228570 | 5'-AGCTGGCCCTGGCACTGACTCTGGCT-3' | 5'-ATGGAAACACCTTGCTTCTTCTCCCTC-3' | 95°C for 5 min; (95°C for 30 s; 63°C for 30 s; 72°C for 30 s); 72°C for 7 min | 33 | 267 |
| CC: 267 |
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| rs1544410 | 5'-ACTTGCATGAGGAGGAGCATGTC-3' | 5'-GGAGAGGAGCCTGTGTCCCATTTG-3' | 95°C for 5 min; (95°C for 45 s; 61°C for 30 s; 72°C for 45 s); 72°C for 7 min | 36 | 812 |
| GG: 475 and 337 |
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| rs7975232 / rs731236 | 5'-GGTGGGATTGAGCAGTG-3' | 5'-ATGCTGCACTCAGGCTG-3' | 95°C for 5 min; (95°C for 30 s; 56°C for 30 s; 72°C for 45 s); 72°C for 7 min | 35 | 280 |
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SNP, single nucleotide polymorphism; bp, base pair.
Figure 1Genotyping the rs11568820 (Cdx2) VDR SNP by TaqMan real-time PCR. X axis represents the number of cycles of PCR reaction and the Y axis presents the ratio between the two fluorescence signals. NTC, negative control; AA, AG, and GG, genotypes of rs11568820 SNP.
Allele and genotype frequencies of VDR SNPs in AIT patients and the control group.
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| Genotype | ||||
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| CC (FF) | 72 (32.29) | 38 (29.23) | 0.71 (0.84 | |
| CT (Ff) | 98 (43.95) | 63 (48.46) | ||
| TT (ff) | 53 (23.77) | 29 (22.31) | ||
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| Allele | ||||
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| C (F) | 242 (54.26) | 139 (53.46) | 0.84 | 1.03 (0.76-1.40) |
| T (f) | 204 (45.74) | 121 (46.54) | ||
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| Genotype | ||||
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| GG (bb) | 86 (39.09) | 43 (35.83) | 0.51 (0.31 | |
| GA (bB) | 99 (45.00) | 52 (43.33) | ||
| AA (BB) | 35 (15.91) | 25 (20.83) | ||
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| Allele | ||||
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| G (b) | 271 (61.59) | 138 (57.50) | 0.30 | 1.19 (0.86-1.63) |
| A (B) | 169 (38.41) | 102 (42.50) | ||
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| Genotype | ||||
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| CC (aa) | 53 (24.65) | 28 (22.40) | 0.78 (0.94 | |
| CA (aA) | 112 (52.09) | 70 (56.00) | ||
| AA (AA) | 50 (23.26) | 27 (21.60) | ||
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| Allele | ||||
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| C (a) | 218 (50.70) | 126 (50.40) | 0.94 | 1.01 (0.74-1.39) |
| A (A) | 212 (49.30) | 124 (49.60) | ||
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| Genotype | ||||
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| TT (TT) | 79 (36.74) | 42 (33.60) | 0.63 (0.38 | |
| TC (Tt) | 106 (49.30) | 61 (48.80) | ||
| CC (tt) | 30 (13.95) | 22 (17.60) | ||
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| Allele | ||||
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| T (T) | 264 (61.40) | 145 (58.00) | 0.38 | 1.15 (0.84-1.58) |
| C (t) | 166 (38.60) | 105 (42.00) | ||
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| Genotype | ||||
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| GG | 118 (71.08) | 91 (76.47) | 0.54 (0.39 | |
| GA | 46 (27.71) | 26 (21.85) | ||
| AA | 2 (1.20) | 2 (1.68) | ||
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| Allele | ||||
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| G | 282 (84.94) | 208 (87.39) | 0.41 | 1.23 (0.76-2.01) |
| A | 50 (15.06) | 30 (12.61) | ||
AIT, autoimmune thyroiditis; OR, odds ratio; CI, confidence interval; ∗χ2 test for trend.
Linkage disequilibrium between VDR gene polymorphisms.
| Locus 1 | Locus 2 | D' (CI) | LOD | r2 |
|---|---|---|---|---|
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| 1.0 (0.94-1.0) | 32.85 | 0.73 |
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| 0.95 (0.89-0.98) | 42.13 | 0.90 |
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| 0.05 (0.0-0.26) | 0.05 | 0.00 |
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| 0.50 (0.18-0.73) | 1.51 | 0.05 |
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| 0.98 (0.9-1.0) | 30.17 | 0.70 |
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| 0.06 (0.0-0.24) | 0.08 | 0.00 |
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| 0.59 (0.21-0.8) | 1.59 | 0.05 |
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| 0.06 (0.0-0.26) | 0.06 | 0.00 |
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| 0.44 (0.14-0.68) | 1.29 | 0.04 |
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| 0.12 (0.01-0.52) | 0.05 | 0.00 |
D', value of D prime between the loci; LOD, likelihood odds ratio;
r2, correlation coefficient between two loci; CI, confidence interval.
Haplotype analysis in AIT patients and the control group.
| Haplotype | AIT (%) | Healthy controls (%) | p | OR | 95% CI |
|---|---|---|---|---|---|
| TCG (Tab) | 49.6 | 50.3 | 0.87 | 0.97 | 0.71-1.34 |
| CAA (tAB) | 37.1 | 40.1 | 0.46 | 0.88 | 0.64-1.23 |
| TAG (TAb) | 9.7 | 7.0 | 0.24 | 1.43 | 0.79-2.59 |
| CAG (tAb) | 1.6 | 1.3 | 0.74 | 1.25 | 0.32-4.97 |
AIT, autoimmune thyroiditis.
The table shows haplotypes with frequencies over 1%.
Figure 2Association between rs1544410 (BsmI) and rs7975232 (ApaI) genotypes and thyroid volume in AIT. Median thyroid volume differed significantly according to rs1544410 or rs7975232 genotypes (p-value of Kruskal-Wallis test was 0.03 and 0.04, resp.). Dunn's post-hoc test was performed to show differences between genotype pairs.