Literature DB >> 31530627

A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos.

Jean-Christophe Cocuron1, Mohamed Koubaa2, Rebecca Kimmelfield3, Zacchary Ross4, Ana Paula Alonso5.   

Abstract

Enhancing fatty acid synthesis (FAS) in maize (Zea mays) has tremendous potential nutritional and economic benefits due to the rapidly growing demand for vegetable oil. In maize kernels, the endosperm and the embryo are the main sites for synthesis and accumulation of starch and oil, respectively. So far, breeding efforts to achieve elevated oil content in maize have resulted in smaller endosperms and therefore lower yield. Directly changing their carbon metabolism may be the key to increasing oil content in maize kernels without affecting yield. To test this hypothesis, the intracellular metabolite levels were compared in maize embryos from two different maize lines, ALEXHO S K SYNTHETIC (Alex) and LH59, which accumulate 48% and 34% of oil, respectively. Comparative metabolomics highlighted the metabolites and pathways that were active in the embryos and important for oil production. The contribution of each pathway to FAS in terms of carbon, reductant, and energy provision was assessed by measuring the carbon flow through the metabolic network (13C-metabolic flux analysis) in developing Alex embryos to build a map of carbon flow through the central metabolism. This approach combined mathematical modeling with biochemical quantification to identify metabolic bottlenecks in FAS in maize embryos. This study describes a combination of innovative tools that will pave the way for controlling seed composition in important food crops.
© 2019 American Society of Plant Biologists. All Rights Reserved.

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Year:  2019        PMID: 31530627      PMCID: PMC6836839          DOI: 10.1104/pp.19.00920

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  54 in total

1.  Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments.

Authors:  M Möllney; W Wiechert; D Kownatzki; A A de Graaf
Journal:  Biotechnol Bioeng       Date:  1999       Impact factor: 4.530

2.  Determination of metabolic flux ratios from 13C-experiments and gas chromatography-mass spectrometry data: protocol and principles.

Authors:  Annik Nanchen; Tobias Fuhrer; Uwe Sauer
Journal:  Methods Mol Biol       Date:  2007

3.  Lack of fructose-1,6-bisphosphatase in a range of higher plants that store starch.

Authors:  G Entwistle; T A ap Rees
Journal:  Biochem J       Date:  1990-10-15       Impact factor: 3.857

4.  Assimilate Unloading from Maize (Zea mays L.) Pedicel Tissues : II. Effects of Chemical Agents on Sugar, Amino Acid, and C-Assimilate Unloading.

Authors:  G A Porter; D P Knievel; J C Shannon
Journal:  Plant Physiol       Date:  1987-10       Impact factor: 8.340

5.  Impact of Environment on the Biomass Composition of Soybean (Glycine max) seeds.

Authors:  Tamara McClure; Jean-Christophe Cocuron; Veronika Osmark; Leah K McHale; Ana Paula Alonso
Journal:  J Agric Food Chem       Date:  2017-08-02       Impact factor: 5.279

6.  Studies of the Enzymic Capacities and Transport Properties of Pea Root Plastids.

Authors:  S. Borchert; J. Harborth; D. Schunemann; P. Hoferichter; H. W. Heldt
Journal:  Plant Physiol       Date:  1993-01       Impact factor: 8.340

7.  Mass isotopomer analysis: theoretical and practical considerations.

Authors:  W N Lee; L O Byerley; E A Bergner; J Edmond
Journal:  Biol Mass Spectrom       Date:  1991-08

8.  Analysis of metabolic flux phenotypes for two Arabidopsis mutants with severe impairment in seed storage lipid synthesis.

Authors:  Joachim Lonien; Jörg Schwender
Journal:  Plant Physiol       Date:  2009-09-15       Impact factor: 8.340

9.  Highlighting the tricarboxylic acid cycle: liquid and gas chromatography-mass spectrometry analyses of (13)C-labeled organic acids.

Authors:  Mohamed Koubaa; Jean-Christophe Cocuron; Brigitte Thomasset; Ana Paula Alonso
Journal:  Anal Biochem       Date:  2013-02-08       Impact factor: 3.365

10.  Liquid chromatography tandem mass spectrometry for measuring ¹³C-labeling in intermediates of the glycolysis and pentose phosphate pathway.

Authors:  Jean-Christophe Cocuron; Ana Paula Alonso
Journal:  Methods Mol Biol       Date:  2014
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  14 in total

1.  Nitrogen inputs influence vegetative metabolism in maize engineered with a seed-specific carotenoid pathway.

Authors:  Patricia S Girón-Calva; Laura Pérez-Fons; Gerhard Sandmann; Paul D Fraser; Paul Christou
Journal:  Plant Cell Rep       Date:  2021-03-31       Impact factor: 4.570

2.  Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism.

Authors:  Cintia Lucía Arias; Truyen Quach; Tu Huynh; Hanh Nguyen; Ademar Moretti; Yu Shi; Ming Guo; Amira Rasoul; Kyujung Van; Leah McHale; Tom Elmo Clemente; Ana Paula Alonso; Chi Zhang
Journal:  Plant Biotechnol J       Date:  2022-03-31       Impact factor: 13.263

3.  Non-conventional pathways enable pennycress (Thlaspi arvense L.) embryos to achieve high efficiency of oil biosynthesis.

Authors:  Enkhtuul Tsogtbaatar; Jean-Christophe Cocuron; Ana Paula Alonso
Journal:  J Exp Bot       Date:  2020-05-30       Impact factor: 6.992

4.  Liquid Chromatography Tandem Mass Spectrometry Quantification of 13C-Labeling in Sugars.

Authors:  Jean-Christophe Cocuron; Zacchary Ross; Ana P Alonso
Journal:  Metabolites       Date:  2020-01-10

5.  13C-Metabolic Flux Analysis in Developing Flax (Linum usitatissinum L.) Embryos to Understand Storage Lipid Biosynthesis.

Authors:  Sébastien Acket; Anthony Degournay; Yannick Rossez; Stéphane Mottelet; Pierre Villon; Adrian Troncoso-Ponce; Brigitte Thomasset
Journal:  Metabolites       Date:  2019-12-24

Review 6.  Promoting Human Nutrition and Health through Plant Metabolomics: Current Status and Challenges.

Authors:  Wenli Sun; Zican Chen; Jun Hong; Jianxin Shi
Journal:  Biology (Basel)       Date:  2020-12-31

7.  Metabolic flux analysis of the non-transitory starch tradeoff for lipid production in mature tobacco leaves.

Authors:  Kevin L Chu; Somnath Koley; Lauren M Jenkins; Sally R Bailey; Shrikaar Kambhampati; Kevin Foley; Jennifer J Arp; Stewart A Morley; Kirk J Czymmek; Philip D Bates; Doug K Allen
Journal:  Metab Eng       Date:  2021-12-14       Impact factor: 9.783

8.  Editorial Feature: Meet the PCP Editor-Ana Paula Alonso.

Authors:  Alonso Ana Paula
Journal:  Plant Cell Physiol       Date:  2021-07-17       Impact factor: 4.927

9.  Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos.

Authors:  Trevor B Romsdahl; Shrikaar Kambhampati; Somnath Koley; Umesh P Yadav; Ana Paula Alonso; Doug K Allen; Kent D Chapman
Journal:  Metabolites       Date:  2021-03-04

Review 10.  The utility of metabolomics as a tool to inform maize biology.

Authors:  David B Medeiros; Yariv Brotman; Alisdair R Fernie
Journal:  Plant Commun       Date:  2021-04-21
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