Literature DB >> 31527277

Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins.

Muneyoshi Ichikawa1, Ahmad Abdelzaher Zaki Khalifa1, Shintaroh Kubo2, Daniel Dai1, Kaustuv Basu3, Mohammad Amin Faghfor Maghrebi1, Javier Vargas1, Khanh Huy Bui4.   

Abstract

Cilia, the hair-like protrusions that beat at high frequencies to propel a cell or move fluid around are composed of radially bundled doublet microtubules. In this study, we present a near-atomic resolution map of the Tetrahymena doublet microtubule by cryoelectron microscopy. The map demonstrates that the network of microtubule inner proteins weaves into the tubulin lattice and forms an inner sheath. From mass spectrometry data and de novo modeling, we identified Rib43a proteins as the filamentous microtubule inner proteins in the protofilament ribbon region. The Rib43a-tubulin interaction leads to an elongated tubulin dimer distance every 2 dimers. In addition, the tubulin lattice structure with missing microtubule inner proteins (MIPs) by sarkosyl treatment shows significant longitudinal compaction and lateral angle change between protofilaments. These results are evidence that the MIPs directly affect and stabilize the tubulin lattice. It suggests that the doublet microtubule is an intrinsically stressed filament and that this stress could be manipulated in the regulation of ciliary waveforms.

Entities:  

Keywords:  axoneme; cilia; ciliopathies; cryoelectron microscopy; microtubule

Year:  2019        PMID: 31527277      PMCID: PMC6778249          DOI: 10.1073/pnas.1911119116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

1.  Protein structure modeling with MODELLER.

Authors:  Benjamin Webb; Andrej Sali
Journal:  Methods Mol Biol       Date:  2014

Review 2.  When cilia go bad: cilia defects and ciliopathies.

Authors:  Manfred Fliegauf; Thomas Benzing; Heymut Omran
Journal:  Nat Rev Mol Cell Biol       Date:  2007-11       Impact factor: 94.444

3.  Repeat motifs of tau bind to the insides of microtubules in the absence of taxol.

Authors:  Santwana Kar; Juan Fan; Michael J Smith; Michel Goedert; Linda A Amos
Journal:  EMBO J       Date:  2003-01-02       Impact factor: 11.598

4.  Low-resolution refinement tools in REFMAC5.

Authors:  Robert A Nicholls; Fei Long; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

5.  Conformational change in the outer doublet microtubules from sea urchin sperm flagella.

Authors:  T Miki-Noumura; R Kamiya
Journal:  J Cell Biol       Date:  1979-05       Impact factor: 10.539

6.  Structural insight into TPX2-stimulated microtubule assembly.

Authors:  Rui Zhang; Johanna Roostalu; Thomas Surrey; Eva Nogales
Journal:  Elife       Date:  2017-11-09       Impact factor: 8.140

7.  Separating the effects of nucleotide and EB binding on microtubule structure.

Authors:  Rui Zhang; Benjamin LaFrance; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

8.  Inner lumen proteins stabilize doublet microtubules in cilia and flagella.

Authors:  Mikito Owa; Takayuki Uchihashi; Haru-Aki Yanagisawa; Takashi Yamano; Hiro Iguchi; Hideya Fukuzawa; Ken-Ichi Wakabayashi; Toshio Ando; Masahide Kikkawa
Journal:  Nat Commun       Date:  2019-03-08       Impact factor: 14.919

9.  FAP20 is an inner junction protein of doublet microtubules essential for both the planar asymmetrical waveform and stability of flagella in Chlamydomonas.

Authors:  Haru-aki Yanagisawa; Garrison Mathis; Toshiyuki Oda; Masafumi Hirono; Elizabeth A Richey; Hiroaki Ishikawa; Wallace F Marshall; Masahide Kikkawa; Hongmin Qin
Journal:  Mol Biol Cell       Date:  2014-02-26       Impact factor: 4.138

10.  The role of tubulin-tubulin lattice contacts in the mechanism of microtubule dynamic instability.

Authors:  Szymon W Manka; Carolyn A Moores
Journal:  Nat Struct Mol Biol       Date:  2018-07-02       Impact factor: 15.369

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  15 in total

1.  Ciliary central apparatus structure reveals mechanisms of microtubule patterning.

Authors:  Miao Gui; Xiangli Wang; Susan K Dutcher; Alan Brown; Rui Zhang
Journal:  Nat Struct Mol Biol       Date:  2022-05-16       Impact factor: 18.361

2.  Remodeling and activation mechanisms of outer arm dyneins revealed by cryo-EM.

Authors:  Shintaroh Kubo; Shun Kai Yang; Corbin S Black; Daniel Dai; Melissa Valente-Paterno; Jacek Gaertig; Muneyoshi Ichikawa; Khanh Huy Bui
Journal:  EMBO Rep       Date:  2021-08-02       Impact factor: 9.071

3.  Preparation of Doublet Microtubule Fraction for Single ParticleCryo-electron Microscopy.

Authors:  Corbin Black; Daniel Chen Dai; Katya Peri; Muneyoshi Ichikawa; Khanh Huy Bui
Journal:  Bio Protoc       Date:  2021-06-05

Review 4.  Intraflagellar transport trains and motors: Insights from structure.

Authors:  Stephanie Webb; Aakash G Mukhopadhyay; Anthony J Roberts
Journal:  Semin Cell Dev Biol       Date:  2020-07-16       Impact factor: 7.727

5.  Cryo-EM structure of cortical microtubules from human parasite Toxoplasma gondii identifies their microtubule inner proteins.

Authors:  Xiangli Wang; Yong Fu; Wandy L Beatty; Meisheng Ma; Alan Brown; L David Sibley; Rui Zhang
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

6.  Electron cryo-tomography structure of axonemal doublet microtubule from Tetrahymena thermophila.

Authors:  Sam Li; Jose-Jesus Fernandez; Amy S Fabritius; David A Agard; Mark Winey
Journal:  Life Sci Alliance       Date:  2021-12-30

7.  The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications.

Authors:  Ahmad Abdelzaher Zaki Khalifa; Muneyoshi Ichikawa; Daniel Dai; Shintaroh Kubo; Corbin Steven Black; Katya Peri; Thomas S McAlear; Simon Veyron; Shun Kai Yang; Javier Vargas; Susanne Bechstedt; Jean-François Trempe; Khanh Huy Bui
Journal:  Elife       Date:  2020-01-17       Impact factor: 8.140

8.  Novel features of centriole polarity and cartwheel stacking revealed by cryo-tomography.

Authors:  Sergey Nazarov; Alexandra Bezler; Georgios N Hatzopoulos; Veronika Nemčíková Villímová; Davide Demurtas; Maeva Le Guennec; Paul Guichard; Pierre Gönczy
Journal:  EMBO J       Date:  2020-09-20       Impact factor: 11.598

9.  Identification and mapping of central pair proteins by proteomic analysis.

Authors:  Daniel Dai; Muneyoshi Ichikawa; Katya Peri; Reid Rebinsky; Khanh Huy Bui
Journal:  Biophys Physicobiol       Date:  2020-06-16

10.  The multi-scale architecture of mammalian sperm flagella and implications for ciliary motility.

Authors:  Miguel Ricardo Leung; Marc C Roelofs; Ravi Teja Ravi; Paula Maitan; Heiko Henning; Min Zhang; Elizabeth G Bromfield; Stuart C Howes; Bart M Gadella; Hermes Bloomfield-Gadêlha; Tzviya Zeev-Ben-Mordehai
Journal:  EMBO J       Date:  2021-03-10       Impact factor: 11.598

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