| Literature DB >> 31523494 |
Leidys Murillo-Ramos1,2, Gunnar Brehm3, Pasi Sihvonen4, Axel Hausmann5, Sille Holm6, Hamid Reza Ghanavi2, Erki Õunap6,7, Andro Truuverk8, Hermann Staude9, Egbert Friedrich10, Toomas Tammaru6, Niklas Wahlberg2.
Abstract
Our study aims to investigate the relationships of the major lineages within the moth family Geometridae, with a focus on the poorly studied Oenochrominae-Desmobathrinae complex, and to translate some of the results into a coherent subfamilial and tribal level classification for the family. We analyzed a molecular dataset of 1,206 Geometroidea terminal taxa from all biogeographical regions comprising up to 11 molecular markers that includes one mitochondrial (COI) and 10 protein-coding nuclear gene regions (wingless, ArgK, MDH, RpS5, GAPDH, IDH, Ca-ATPase, Nex9, EF-1alpha, CAD). The molecular data set was analyzed using maximum likelihood as implemented in IQ-TREE and RAxML. We found high support for the subfamilies Larentiinae, Geometrinae and Ennominae in their traditional scopes. Sterrhinae becomes monophyletic only if Ergavia Walker, Ametris Hübner and Macrotes Westwood, which are currently placed in Oenochrominae, are formally transferred to Sterrhinae. Desmobathrinae and Oenochrominae are found to be polyphyletic. The concepts of Oenochrominae and Desmobathrinae required major revision and, after appropriate rearrangements, these groups also form monophyletic subfamily-level entities. Oenochrominae s.str. as originally conceived by Guenée is phylogenetically distant from Epidesmia and its close relatives. The latter is hereby described as the subfamily Epidesmiinae Murillo-Ramos, Sihvonen & Brehm, subfam. nov. Epidesmiinae are a lineage of "slender-bodied Oenochrominae" that include the genera Ecphyas Turner, Systatica Turner, Adeixis Warren, Dichromodes Guenée, Phrixocomes Turner, Abraxaphantes Warren, Epidesmia Duncan & Westwood and Phrataria Walker. Archiearinae are monophyletic when Dirce and Acalyphes are formally transferred to Ennominae. We also found that many tribes were para- or polyphyletic and therefore propose tens of taxonomic changes at the tribe and subfamily levels. Archaeobalbini stat. rev. Viidalepp (Geometrinae) is raised from synonymy with Pseudoterpnini Warren to tribal rank. Chlorodontoperini Murillo-Ramos, Sihvonen & Brehm, trib. nov. and Drepanogynini Murillo-Ramos, Sihvonen & Brehm, trib. nov. are described as new tribes in Geometrinae and Ennominae, respectively.Entities:
Keywords: Epidesmiinae; Loopers; Moths; New subfamily; Phylogeny; Taxonomy
Year: 2019 PMID: 31523494 PMCID: PMC6716565 DOI: 10.7717/peerj.7386
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Evolutionary models recovered in ModelFinder.
| Evolutionary models | Codon position | Data type |
|---|---|---|
| SYM+R5 | ArgK_pos1 | Nuclear |
| SYM+R4 | ArgK_pos2_Ca-ATPase_pos2 | Nuclear |
| GTR+F+R6 | ArgK_pos3 | Nuclear |
| GTR+F+R5 | Ca-ATPase_pos1_IDH_pos1 | Nuclear |
| SYM+I+G4 | Ca-ATPase_pos3 | Nuclear |
| SYM+I+G4 | CAD_pos1 | Nuclear |
| K3P+I+G4 | CAD_pos2 | Nuclear |
| GTR+F+R7 | CAD_pos3 | Nuclear |
| TIM2+F+I+G4 | COI_pos1 | Mitochondrial |
| K2P+R8 | COI_pos2_MDH_pos2_RpS5_pos2_WntGeo_pos2 | Mitochondrial/Nuclear |
| GTR+F+ASC+R10 | COI_pos3 | Mitochondrial |
| TIM2e+R10 | EF1a_pos1 | Nuclear |
| TIM+F+I+G4 | EF1a_pos2 | Nuclear |
| SYM+R10 | EF1a_pos3_GAPDH_pos3_RpS5_pos3 | Nuclear |
| TVM+F+I+G4 | GAPDH_pos1 | Nuclear |
| SYM+I+G4 | GAPDH_pos2 | Nuclear |
| GTR+F+R4 | IDH_pos2 | Nuclear |
| SYM+R6 | IDH_pos3 | Nuclear |
| GTR+F+I+G4 | MDH_pos1 | Nuclear |
| SYM+I+G4 | MDH_pos3 | Nuclear |
| SYM+I+G4 | Nex9_pos1 | Nuclear |
| K3P+I+G4 | Nex9_pos2 | Nuclear |
| GTR+F+R6 | Nex9_pos3 | Nuclear |
| SYM+I+G4 | RpS5_pos1 | Nuclear |
| GTR+F+I+G4 | WntGeo_pos1 | Nuclear |
| SYM+R7 | WntGeo_pos3 | Nuclear |
Figure 1Evolutionary relationships of major groups of the family Geometridae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). *Formal taxonomic treatment will be dealt with in P. Sihvonen et al., 2019, unpublished data. § Epidesmiinae subfam. nov. See Oenochrominae section for more details.
Figure 2Evolutionary relationships of the subfamily Sterrhinae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). * Formal taxonomic treatment will be dealt with in P. Sihvonen et al., 2019, unpublished data.
Figure 3Evolutionary relationships of the subfamily Larentiinae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). * Formal taxonomic treatment will be dealt with in P. Sihvonen et al., 2019, unpublished data.
Figure 4Phylogenetic relationships of the subfamilies Archierinae, Desmobathrinae, Epidesmiinae subfam. nov., Oenochrominae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). Taxonomic changes are indicated by a symobolized arrow >. * Formal taxonomic treatment will be dealt with in P. Sihvonen et al., 2019, unpublished data.
Figure 5Evolutionary relationships of the subfamily Geometrinae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). Taxonomic changes are indicated by a symobolized arrow >. § New subfamily.
Figure 6Evolutionary relationships of the subfamily Ennominae.
Numbers above branches are SH-aLRT support (%)/ultrafast bootstrap support, UFBoot2(%), for nodes to the right of the numbers. Values of SH ≥ 80 and UFBoot2 ≥ 95 indicate well-supported clades (Trifinopoulos & Minh, 2018). Taxonomic changes are indicated by a symobolized arrow >.* Formal taxonomic treatment will be dealt with in G. Brehm et al., 2019, unpublished data.
Summary of formally proposed taxonomic changes.
| Archaeobalbini, | Type genus: | |
| Chlorodontoperini, Murillo-Ramos, Sihvonen & Brehm, | Type genus: | |
| Drepanogynini, Murillo-Ramos, Sihvonen & Brehm, | Type genus: | |
| Lithinini Forbes, 1948, | Diptychini Janse, 1933 (Ennominae) | |
| Synchlorini Ferguson, 1969 | Nemoriini Gumppenberg, 1887 (Geometrinae) | |