| Literature DB >> 31519900 |
Jingzhen Du1, Carlos Alvarez-Lamsfus2, Elizabeth P Wildman1, Ashley J Wooles1, Laurent Maron3, Stephen T Liddle4.
Abstract
AlthoughEntities:
Year: 2019 PMID: 31519900 PMCID: PMC6744569 DOI: 10.1038/s41467-019-12206-5
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
Fig. 1Synthesis of the compounds reported in this study. a Treatment of 1 with sodium azide produces the thorium-azide 2, which when reduced in toluene with potassium graphite gives the known thorium-benzyl 3. When the same reduction is conducted in benzene the thorium-imidos 4M are isolated, and these complexes can alternatively be prepared by deprotonation of the thorium-amide 5. Notably, when the deprotonation of 5 is conducted in toluene an imido/toluene-amide-benzyl equilibrium is established. Attempts to trap the thorium-nitride intermediate resulted in the isolation of the cyclic amine 7. b Treatment of the potassium-amide 8 with a thorium separated ion pair gives the thorium-methoxide 9 whereas use of a less sterically demanding thorium-iodide gives the isolable thorium-amide 10
Fig. 2Molecular structures of 4K, 5, 6 and 10 with selective labelling. a the parent imido dimer 4K. b the parent amide 5. c the borane-capped azide 6. d the amide-heterocycle 10. The data for these complexes were collected at 150 K, displacement ellipsoids are presented at 40% probability and non-imido hydrogen atoms and minor disorder components are omitted for clarity
Fig. 3Computed reaction profile for the reduction of 2 by potassium in toluene. This pathway accounts for the reduction of the azide to nitride then subsequent protonation from toluene solvent to give a parent imido which reacts further with toluene to give parent amide 5 along with benzyl 3 and potassium-azide in-line with experimental findings. The iso-propyl groups of the silyl substituents are omitted for clarity. In this reaction scheme potassium rather than potassium graphite was used to give a tractable calculation
Fig. 4Views of the potassium-azide stabilising interactions. These are both in the first transition state of Figs. 3 and 5 at 1.3 kcal/mol as the azide is activated and extrudes N2. These frontier orbitals alternatively highlight the interaction of the azide unit with vacant sp-hybrid orbitals of the two potassium ions following electron transfer from the latter into the π*-orbitals of the former. The iso-propyl groups of the silyl substituents are omitted for clarity
Fig. 5Computed reaction profile for the reduction of 2 by potassium in benzene. This pathway accounts for the reduction of the azide to nitride then subsequent protonation from benzene solvent to give a parent imido, which dimerises in-line with experimental findings. The iso-propyl groups of the silyl substituents are omitted for clarity. In this reaction scheme potassium rather than potassium graphite was used to give a tractable calculation
Selected computed DFT, NBO, and QTAIM data for 2, 4M, 5, and 11–14
| Bond lengths and indices | MDC atomic charges | NBO σ-componentf | NBO | QTAIM parametersg | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entrya | An-Nb | BIc |
|
| %An | %N | An s:p:d:f | %An | %N | An s:p:d:f | ρ(r) | ∇2ρ(r) | ||
|
| 2.355 | 0.55 | 1.48 | −0.7 | 6 | 94 | 7:1:48:44 | – | – | – | 0.07 | 0.19 | −0.06 | 0.00 |
|
| 2.237 | 0.87 | 1.57 | −1.02 | 7 | 93 | 2:1:49:48 | 8 | 92 | 1:2:53:44 | 0.11 | 0.19 | −0.05 | 0.18 |
|
| 2.191 | 0.92 | 1.65 | −1.14 | 8 | 92 | 2:1:49:48 | 10 | 90 | 1:1:57:41 | 0.12 | 0.22 | −0.07 | 0.16 |
|
| 2.183 | 1.24 | 1.66 | −1.23 | 8 | 92 | 1:2:45:52 | 10 | 90 | 2:1:51:46 | 0.12 | 0.22 | −0.07 | 0.17 |
|
| 2.165 | 1.26 | 1.71 | −1.26 | 8 | 92 | 1:2:44:53 | 10 | 90 | 2:1:51:56 | 0.13 | 0.24 | −0.07 | 0.17 |
|
| 2.161 | 1.29 | 1.72 | −1.25 | 7 | 93 | 1:2:44:53 | 10 | 90 | 2:1:52:48 | 0.13 | 0.24 | −0.07 | 0.16 |
|
| 2.311 | 0.54 | 1.51 | −1.08 | 0 | 100 | – | 8 | 92 | 0:0:42:58 | 0.09 | 0.21 | −0.04 | 0.33 |
|
| 1.925 | 2.88 | 1.90 | −1.29 | 25 | 75 | 12:5:33:50 | 13 | 87 | 0:0:52:48 | 0.23 | 0.15 | −0.23 | 0.25 |
|
| 1.832 | 2.91 | 1.89 | −1.29 | 34 | 64 | 2:2:16:80 | 26 | 74 | 0:0:24:76 | 0.28 | 0.11 | −0.34 | 0.16 |
|
| 1.810 | 2.91 | 3.34 | −1.36 | 32 | 68 | 5:4:44:47 | 26 | 73 | 0:0:28:72 | 0.29 | 0.24 | −0.27 | 0.01 |
|
| 1.779 | 2.92 | 3.79 | −1.35 | 41 | 59 | 1:1:9:89 | 30 | 70 | 0:0:19:81 | 0.39 | 0.21 | −0.30 | 0.06 |
aAll molecules geometry optimised without symmetry constraints at the BP86 TZP/ZORA level
bCalculated An-N distances (Å)
cMayer bond indices
dMDC-q charges on An metal
eMDC-q charges on nitrogen
fNatural Bond Orbital (NBO) analyses
gQTAIM topological electron density [ρ(r)], Laplacian [∇²ρ(r)], electronic energy density [H(r)], and ellipticity [ε(r)] bond critical point data
Fig. 6Frontier molecular orbitals of [M(TrenTIPS)(N)]2− (M = Th, 11; M = U, 12). a HOMO of 11 (221, 3.382 eV), b HOMO−1 of 11 (220, 2.757 eV), c HOMO−2 of 11 (219, 2.746 eV), d α-spin HOMO−2 of 12 (221a, 1.679 eV), e α-spin HOMO−3 of 12 (220a, 1.215 eV), f α-spin HOMO−4 of 12 (219a, 1.200 eV). The HOMO (223a, 3.921 eV) and HOMO−1 (222a, 3.824 eV) in the α-spin manifold of 12 are of essentially pure, non-bonding 5 f orbital single electron character. Hydrogen atoms in these all-electron DFT calculations are omitted from these visualisations for clarity