Literature DB >> 31515540

Transposable elements in human genetic disease.

Lindsay M Payer1, Kathleen H Burns2,3.   

Abstract

Transposable elements are abundant in the human genome, and great strides have been made in pinpointing variations in these repetitive sequences using whole-genome sequencing. Now, the focus is shifting to understanding their expression and regulation, and the functional consequences of their insertion and retention in the genome over time. Whereas transposable element insertions have been known to cause human genetic disease since the 1980s, the scope of their contributions to heritable phenotypes is now starting to be uncovered. Here, we review the many ways human retrotransposons contribute to genome function, their dysregulation in diseases including cancer and how they affect genetic disease.

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Year:  2019        PMID: 31515540     DOI: 10.1038/s41576-019-0165-8

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  153 in total

1.  Initial sequencing and analysis of the human genome.

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes.

Authors:  Matyas Flemr; Radek Malik; Vedran Franke; Jana Nejepinska; Radislav Sedlacek; Kristian Vlahovicek; Petr Svoboda
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

3.  DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome.

Authors:  Tuğçe Aktaş; İbrahim Avşar Ilık; Daniel Maticzka; Vivek Bhardwaj; Cecilia Pessoa Rodrigues; Gerhard Mittler; Thomas Manke; Rolf Backofen; Asifa Akhtar
Journal:  Nature       Date:  2017-03-29       Impact factor: 49.962

4.  Evidence for positive selection on recent human transposable element insertions.

Authors:  Lavanya Rishishwar; Lu Wang; Jianrong Wang; Soojin V Yi; Joseph Lachance; I King Jordan
Journal:  Gene       Date:  2018-06-25       Impact factor: 3.688

5.  Fitness cost of LINE-1 (L1) activity in humans.

Authors:  Stephane Boissinot; Jerel Davis; Ali Entezam; Dimitri Petrov; Anthony V Furano
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-09       Impact factor: 11.205

Review 6.  Regulatory activities of transposable elements: from conflicts to benefits.

Authors:  Edward B Chuong; Nels C Elde; Cédric Feschotte
Journal:  Nat Rev Genet       Date:  2016-11-21       Impact factor: 53.242

7.  Regulatory evolution of innate immunity through co-option of endogenous retroviruses.

Authors:  Edward B Chuong; Nels C Elde; Cédric Feschotte
Journal:  Science       Date:  2016-03-04       Impact factor: 47.728

8.  Splicing repression allows the gradual emergence of new Alu-exons in primate evolution.

Authors:  Jan Attig; Igor Ruiz de Los Mozos; Nejc Haberman; Zhen Wang; Warren Emmett; Kathi Zarnack; Julian König; Jernej Ule
Journal:  Elife       Date:  2016-11-18       Impact factor: 8.140

9.  29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome.

Authors:  Craig B Lowe; David Haussler
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

10.  Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation.

Authors:  Daniel R Fuentes; Tomek Swigut; Joanna Wysocka
Journal:  Elife       Date:  2018-08-02       Impact factor: 8.140

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  81 in total

Review 1.  Transposable elements shape the evolution of mammalian development.

Authors:  Anna D Senft; Todd S Macfarlan
Journal:  Nat Rev Genet       Date:  2021-08-05       Impact factor: 53.242

2.  Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.

Authors:  Yuhang Zhang; Elizabeth Corbett; Shenping Wu; David G Schatz
Journal:  EMBO J       Date:  2020-09-18       Impact factor: 11.598

3.  Contribution of unfixed transposable element insertions to human regulatory variation.

Authors:  Clément Goubert; Nicolas Arce Zevallos; Cédric Feschotte
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

Review 4.  Measuring and interpreting transposable element expression.

Authors:  Sophie Lanciano; Gael Cristofari
Journal:  Nat Rev Genet       Date:  2020-06-23       Impact factor: 53.242

5.  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.

Authors:  Di Chen; Marzia A Cremona; Zongtai Qi; Robi D Mitra; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

6.  Integrating transposable elements in the 3D genome.

Authors:  Alexandros Bousios; Hans-Wilhelm Nützmann; Dorothy Buck; Davide Michieletto
Journal:  Mob DNA       Date:  2020-02-04

7.  The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W.

Authors:  Akihisa Osakabe; Bhagyshree Jamge; Elin Axelsson; Sean A Montgomery; Svetlana Akimcheva; Annika Luisa Kuehn; Rahul Pisupati; Zdravko J Lorković; Ramesh Yelagandula; Tetsuji Kakutani; Frédéric Berger
Journal:  Nat Cell Biol       Date:  2021-04-08       Impact factor: 28.824

8.  Silencing of LINE-1 retrotransposons is a selective dependency of myeloid leukemia.

Authors:  Zhimin Gu; Yuxuan Liu; Yuannyu Zhang; Hui Cao; Junhua Lyu; Xun Wang; Annika Wylie; Simon J Newkirk; Amanda E Jones; Michael Lee; Giovanni A Botten; Mi Deng; Kathryn E Dickerson; Cheng Cheng Zhang; Wenfeng An; John M Abrams; Jian Xu
Journal:  Nat Genet       Date:  2021-04-08       Impact factor: 38.330

Review 9.  HSV-1 and Endogenous Retroviruses as Risk Factors in Demyelination.

Authors:  Raquel Bello-Morales; Sabina Andreu; Inés Ripa; José Antonio López-Guerrero
Journal:  Int J Mol Sci       Date:  2021-05-27       Impact factor: 5.923

Review 10.  The biogenesis and biological function of PIWI-interacting RNA in cancer.

Authors:  Silu Chen; Shuai Ben; Junyi Xin; Shuwei Li; Rui Zheng; Hao Wang; Lulu Fan; Mulong Du; Zhengdong Zhang; Meilin Wang
Journal:  J Hematol Oncol       Date:  2021-06-12       Impact factor: 17.388

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