Literature DB >> 31511682

Anthropogenic biases in chemical reaction data hinder exploratory inorganic synthesis.

Xiwen Jia1, Allyson Lynch1, Yuheng Huang1, Matthew Danielson1, Immaculate Lang'at1, Alexander Milder1, Aaron E Ruby1, Hao Wang1, Sorelle A Friedler2, Alexander J Norquist3, Joshua Schrier4,5.   

Abstract

Most chemical experiments are planned by human scientists and therefore are subject to a variety of human cognitive biases1, heuristics2 and social influences3. These anthropogenic chemical reaction data are widely used to train machine-learning models4 that are used to predict organic5 and inorganic6,7 syntheses. However, it is known that societal biases are encoded in datasets and are perpetuated in machine-learning models8. Here we identify as-yet-unacknowledged anthropogenic biases in both the reagent choices and reaction conditions of chemical reaction datasets using a combination of data mining and experiments. We find that the amine choices in the reported crystal structures of hydrothermal synthesis of amine-templated metal oxides9 follow a power-law distribution in which 17% of amine reactants occur in 79% of reported compounds, consistent with distributions in social influence models10-12. An analysis of unpublished historical laboratory notebook records shows similarly biased distributions of reaction condition choices. By performing 548 randomly generated experiments, we demonstrate that the popularity of reactants or the choices of reaction conditions are uncorrelated to the success of the reaction. We show that randomly generated experiments better illustrate the range of parameter choices that are compatible with crystal formation. Machine-learning models that we train on a smaller randomized reaction dataset outperform models trained on larger human-selected reaction datasets, demonstrating the importance of identifying and addressing anthropogenic biases in scientific data.

Entities:  

Mesh:

Year:  2019        PMID: 31511682     DOI: 10.1038/s41586-019-1540-5

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  11 in total

Review 1.  Big-Data Science in Porous Materials: Materials Genomics and Machine Learning.

Authors:  Kevin Maik Jablonka; Daniele Ongari; Seyed Mohamad Moosavi; Berend Smit
Journal:  Chem Rev       Date:  2020-06-10       Impact factor: 60.622

2.  Chemical property prediction under experimental biases.

Authors:  Yang Liu; Hisashi Kashima
Journal:  Sci Rep       Date:  2022-05-17       Impact factor: 4.996

3.  COVID-19 research risks ignoring important host genes due to pre-established research patterns.

Authors:  Thomas Stoeger; Luís A Nunes Amaral
Journal:  Elife       Date:  2020-11-24       Impact factor: 8.140

4.  Quantitative interpretation explains machine learning models for chemical reaction prediction and uncovers bias.

Authors:  Dávid Péter Kovács; William McCorkindale; Alpha A Lee
Journal:  Nat Commun       Date:  2021-03-16       Impact factor: 14.919

Review 5.  Opportunities and challenges of text mining in aterials research.

Authors:  Olga Kononova; Tanjin He; Haoyan Huo; Amalie Trewartha; Elsa A Olivetti; Gerbrand Ceder
Journal:  iScience       Date:  2021-02-06

6.  Towards Predictive Synthesis of Inorganic Materials Using Network Science.

Authors:  Alex Aziz; Javier Carrasco
Journal:  Front Chem       Date:  2021-12-21       Impact factor: 5.221

7.  Mechanistic insight of KBiQ2 (Q = S, Se) using panoramic synthesis towards synthesis-by-design.

Authors:  Rebecca McClain; Christos D Malliakas; Jiahong Shen; Jiangang He; Chris Wolverton; Gabriela B González; Mercouri G Kanatzidis
Journal:  Chem Sci       Date:  2020-11-23       Impact factor: 9.825

Review 8.  Progress and prospects for accelerating materials science with automated and autonomous workflows.

Authors:  Helge S Stein; John M Gregoire
Journal:  Chem Sci       Date:  2019-09-20       Impact factor: 9.825

9.  SAVI, in silico generation of billions of easily synthesizable compounds through expert-system type rules.

Authors:  Hitesh Patel; Wolf-Dietrich Ihlenfeldt; Philip N Judson; Yurii S Moroz; Yuri Pevzner; Megan L Peach; Victorien Delannée; Nadya I Tarasova; Marc C Nicklaus
Journal:  Sci Data       Date:  2020-11-11       Impact factor: 6.444

10.  The Role of Machine Learning in the Understanding and Design of Materials.

Authors:  Seyed Mohamad Moosavi; Kevin Maik Jablonka; Berend Smit
Journal:  J Am Chem Soc       Date:  2020-11-10       Impact factor: 15.419

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