Literature DB >> 31502467

HIV Proviral Sequence Database: A New Public Database for Near Full-Length HIV Proviral Sequences and Their Meta-Analyses.

Wei Shao1, Jigui Shan1, Wei-Shau Hu2, Elias Konstantine Halvas3, John W Mellors3, John M Coffin4, Mary F Kearney2.   

Abstract

Entities:  

Year:  2019        PMID： 31502467      PMCID： PMC6944138          DOI： 10.1089/AID.2019.0214

Source DB:  PubMed          Journal:  AIDS Res Hum Retroviruses        ISSN： 0889-2229            Impact factor:   2.205


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  5 in total

1.  Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.

Authors:  T W Chun; L Stuyver; S B Mizell; L A Ehler; J A Mican; M Baseler; A L Lloyd; M A Nowak; A S Fauci
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

2.  Identification of Genetically Intact HIV-1 Proviruses in Specific CD4+ T Cells from Effectively Treated Participants.

Authors:  Bonnie Hiener; Bethany A Horsburgh; John-Sebastian Eden; Kirston Barton; Timothy E Schlub; Eunok Lee; Susanne von Stockenstrom; Lina Odevall; Jeffrey M Milush; Teri Liegler; Elizabeth Sinclair; Rebecca Hoh; Eli A Boritz; Daniel Douek; Rémi Fromentin; Nicolas Chomont; Steven G Deeks; Frederick M Hecht; Sarah Palmer
Journal:  Cell Rep       Date:  2017-10-17       Impact factor: 9.423

Review 3.  Life of psi: how full-length HIV-1 RNAs become packaged genomes in the viral particles.

Authors:  Malika Kuzembayeva; Kari Dilley; Luca Sardo; Wei-Shau Hu
Journal:  Virology       Date:  2014-02-14       Impact factor: 3.616

4.  Replication-competent noninduced proviruses in the latent reservoir increase barrier to HIV-1 cure.

Authors:  Ya-Chi Ho; Liang Shan; Nina N Hosmane; Jeffrey Wang; Sarah B Laskey; Daniel I S Rosenbloom; Jun Lai; Joel N Blankson; Janet D Siliciano; Robert F Siliciano
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

5.  Defective proviruses rapidly accumulate during acute HIV-1 infection.

Authors:  Katherine M Bruner; Alexandra J Murray; Ross A Pollack; Mary G Soliman; Sarah B Laskey; Adam A Capoferri; Jun Lai; Matthew C Strain; Steven M Lada; Rebecca Hoh; Ya-Chi Ho; Douglas D Richman; Steven G Deeks; Janet D Siliciano; Robert F Siliciano
Journal:  Nat Med       Date:  2016-08-08       Impact factor: 53.440
  5 in total
  9 in total

1.  Antigen-driven clonal selection shapes the persistence of HIV-1-infected CD4+ T cells in vivo.

Authors:  Francesco R Simonetti; Hao Zhang; Garshasb P Soroosh; Jiayi Duan; Kyle Rhodehouse; Alison L Hill; Subul A Beg; Kevin McCormick; Hayley E Raymond; Christopher L Nobles; John K Everett; Kyungyoon J Kwon; Jennifer A White; Jun Lai; Joseph B Margolick; Rebecca Hoh; Steven G Deeks; Frederic D Bushman; Janet D Siliciano; Robert F Siliciano
Journal:  J Clin Invest       Date:  2021-02-01       Impact factor: 14.808

2.  Plasma-Derived HIV-1 Virions Contain Considerable Levels of Defective Genomes.

Authors:  Katie Fisher; Xiao Qian Wang; Ashley Lee; Vincent Morcilla; Anneke de Vries; Eunok Lee; John-Sebastian Eden; Steven G Deeks; Anthony D Kelleher; Sarah Palmer
Journal:  J Virol       Date:  2022-03-23       Impact factor: 5.103

3.  HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus.

Authors:  Elias K Halvas; Kevin W Joseph; Leah D Brandt; Shuang Guo; Michele D Sobolewski; Jana L Jacobs; Camille Tumiotto; John K Bui; Joshua C Cyktor; Brandon F Keele; Gene D Morse; Michael J Bale; Wei Shao; Mary F Kearney; John M Coffin; Jason W Rausch; Xiaolin Wu; Stephen H Hughes; John W Mellors
Journal:  J Clin Invest       Date:  2020-11-02       Impact factor: 14.808

4.  A highly multiplexed droplet digital PCR assay to measure the intact HIV-1 proviral reservoir.

Authors:  Claire N Levy; Sean M Hughes; Pavitra Roychoudhury; Daniel B Reeves; Chelsea Amstuz; Haiying Zhu; Meei-Li Huang; Yulun Wei; Marta E Bull; Noah A J Cassidy; Jan McClure; Lisa M Frenkel; Mars Stone; Sonia Bakkour; Elizabeth R Wonderlich; Michael P Busch; Steven G Deeks; Joshua T Schiffer; Robert W Coombs; Dara A Lehman; Keith R Jerome; Florian Hladik
Journal:  Cell Rep Med       Date:  2021-04-12

Review 5.  New Approaches to Multi-Parametric HIV-1 Genetics Using Multiple Displacement Amplification: Determining the What, How, and Where of the HIV-1 Reservoir.

Authors:  Sean C Patro; Aurelie Niyongabo; Frank Maldarelli; Mary F Kearney
Journal:  Viruses       Date:  2021-12-10       Impact factor: 5.048

6.  Insertional activation of STAT3 and LCK by HIV-1 proviruses in T cell lymphomas.

Authors:  John W Mellors; Shuang Guo; Asma Naqvi; Leah D Brandt; Ling Su; Zhonghe Sun; Kevin W Joseph; Dimiter Demirov; Elias K Halvas; Donna Butcher; Beth Scott; Aaron Hamilton; Marintha Heil; Baktiar Karim; Xiaolin Wu; Stephen H Hughes
Journal:  Sci Adv       Date:  2021-10-13       Impact factor: 14.136

7.  HIV-1 proviral landscape characterization varies by pipeline analysis.

Authors:  Fernanda A Ferreira; Qianjing He; Stephanie Banning; Olivia Roberts-Sano; Olivia Wilkins; Daniel R Kuritzkes; Athe Tsibris
Journal:  J Int AIDS Soc       Date:  2021-07       Impact factor: 5.396

8.  HIV reservoir quantification using cross-subtype multiplex ddPCR.

Authors:  Noah A J Cassidy; Carolyn S Fish; Claire N Levy; Pavitra Roychoudhury; Daniel B Reeves; Sean M Hughes; Joshua T Schiffer; Sarah Benki-Nugent; Grace John-Stewart; Dalton Wamalwa; Keith R Jerome; Julie Overbaugh; Florian Hladik; Dara A Lehman
Journal:  iScience       Date:  2021-12-11

9.  HIVIntact: a python-based tool for HIV-1 genome intactness inference.

Authors:  Imogen A Wright; Michael J Bale; Wei Shao; Wei-Shau Hu; John M Coffin; Gert U Van Zyl; Mary F Kearney
Journal:  Retrovirology       Date:  2021-06-27       Impact factor: 3.768
  9 in total

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