Literature DB >> 31502417

Accelerating Medicines Partnership: Organizational Structure and Preliminary Data From the Phase 1 Studies of Lupus Nephritis.

Paul Hoover1, Evan Der2, Celine C Berthier3, Arnon Arazi1, James A Lederer4, Judith A James5, Jill Buyon6, Michelle Petri7, H Michael Belmont6, Peter Izmirly6, David Wofsy8, Nir Hacohen1, Betty Diamond9, Chaim Putterman2, Anne Davidson9.   

Abstract

The Accelerating Medicines Partnership (AMP) Lupus Network was established as a partnership between the National Institutes of Health, pharmaceutical companies, nonprofit stakeholders, and lupus investigators across multiple academic centers to apply high-throughput technologies to the analysis of renal tissue, urine, and blood from patients with lupus nephritis (LN). The AMP network provides publicly accessible data to the community with the goal of generating new scientific hypotheses and improving diagnostic and therapeutic tools so as to improve disease outcomes. We present here a description of the structure of the AMP Lupus Network and a summary of the preliminary results from the phase 1 studies. The successful completion of phase 1 sets the stage for analysis of a large cohort of LN samples in phase 2 and provides a model for establishing similar discovery cohorts.
© 2019, American College of Rheumatology.

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Year:  2020        PMID: 31502417      PMCID: PMC6992476          DOI: 10.1002/acr.24066

Source DB:  PubMed          Journal:  Arthritis Care Res (Hoboken)        ISSN: 2151-464X            Impact factor:   4.794


  35 in total

1.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

2.  Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.

Authors:  Romain Banchereau; Seunghee Hong; Brandi Cantarel; Nicole Baldwin; Jeanine Baisch; Michelle Edens; Alma-Martina Cepika; Peter Acs; Jacob Turner; Esperanza Anguiano; Parvathi Vinod; Shaheen Khan; Gerlinde Obermoser; Derek Blankenship; Edward Wakeland; Lorien Nassi; Alisa Gotte; Marilynn Punaro; Yong-Jun Liu; Jacques Banchereau; Jose Rossello-Urgell; Tracey Wright; Virginia Pascual
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

3.  Urine peptidomic biomarkers for diagnosis of patients with systematic lupus erythematosus.

Authors:  M Pejchinovski; J Siwy; W Mullen; H Mischak; M A Petri; L C Burkly; R Wei
Journal:  Lupus       Date:  2017-05-05       Impact factor: 2.911

4.  Predicting outcomes of lupus nephritis with tubulointerstitial inflammation and scarring.

Authors:  Christine Hsieh; Anthony Chang; Daniel Brandt; Riteesha Guttikonda; Tammy O Utset; Marcus R Clark
Journal:  Arthritis Care Res (Hoboken)       Date:  2011-06       Impact factor: 4.794

5.  Irreproducibility of the activity and chronicity indices limits their utility in the management of lupus nephritis. Lupus Nephritis Collaborative Study Group.

Authors:  M M Schwartz; S P Lan; J Bernstein; G S Hill; K Holley; E J Lewis
Journal:  Am J Kidney Dis       Date:  1993-04       Impact factor: 8.860

6.  Up-regulation of endothelial cell adhesion molecules characterizes disease activity in systemic lupus erythematosus. The Shwartzman phenomenon revisited.

Authors:  H M Belmont; J Buyon; R Giorno; S Abramson
Journal:  Arthritis Rheum       Date:  1994-03

7.  Prognosis of proliferative lupus nephritis subsets in the Louvain Lupus Nephritis inception Cohort.

Authors:  J Vandepapelière; S Aydin; J-P Cosyns; G Depresseux; M Jadoul; F A Houssiau
Journal:  Lupus       Date:  2013-12-03       Impact factor: 2.911

8.  All-Cause and Cause-Specific Mortality Trends of End-Stage Renal Disease Due to Lupus Nephritis From 1995 to 2014.

Authors:  April Jorge; Zachary S Wallace; Yuqing Zhang; Na Lu; Karen H Costenbader; Hyon K Choi
Journal:  Arthritis Rheumatol       Date:  2019-01-09       Impact factor: 10.995

9.  Fast, sensitive and accurate integration of single-cell data with Harmony.

Authors:  Ilya Korsunsky; Nghia Millard; Jean Fan; Kamil Slowikowski; Fan Zhang; Kevin Wei; Yuriy Baglaenko; Michael Brenner; Po-Ru Loh; Soumya Raychaudhuri
Journal:  Nat Methods       Date:  2019-11-18       Impact factor: 28.547

10.  Reversed graph embedding resolves complex single-cell trajectories.

Authors:  Xiaojie Qiu; Qi Mao; Ying Tang; Li Wang; Raghav Chawla; Hannah A Pliner; Cole Trapnell
Journal:  Nat Methods       Date:  2017-08-21       Impact factor: 47.990

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  4 in total

Review 1.  Cellular and molecular interrogation of kidney biopsy specimens.

Authors:  Michael T Eadon; Pierre C Dagher; Tarek M El-Achkar
Journal:  Curr Opin Nephrol Hypertens       Date:  2022-03-01       Impact factor: 2.894

2.  Lupus Susceptibility Loci Predispose Mice to Clonal Lymphocytic Responses and Myeloid Expansion.

Authors:  Elliot H Akama-Garren; Michael C Carroll
Journal:  J Immunol       Date:  2022-04-27       Impact factor: 5.426

3.  Urine Single-Cell RNA Sequencing in Focal Segmental Glomerulosclerosis Reveals Inflammatory Signatures.

Authors:  Khun Zaw Latt; Jurgen Heymann; Joseph H Jessee; Avi Z Rosenberg; Celine C Berthier; Arnon Arazi; Sean Eddy; Teruhiko Yoshida; Yongmei Zhao; Vicky Chen; George W Nelson; Margaret Cam; Parimal Kumar; Monika Mehta; Michael C Kelly; Matthias Kretzler; Patricio E Ray; Marva Moxey-Mims; Gregory H Gorman; Brent L Lechner; Renu Regunathan-Shenk; Dominic S Raj; Katalin Susztak; Cheryl A Winkler; Jeffrey B Kopp
Journal:  Kidney Int Rep       Date:  2021-11-25

4.  Safety of procuring research tissue during a clinically indicated kidney biopsy from patients with lupus: data from the Accelerating Medicines Partnership RA/SLE Network.

Authors:  Kristina K Deonaraine; Philip M Carlucci; Andrea Fava; Jessica Li; David Wofsy; Judith A James; Chaim Putterman; Betty Diamond; Anne Davidson; Derek M Fine; Jose Monroy-Trujillo; Mohamed G Atta; Kristin Haag; Deepak A Rao; William Apruzzese; H Michael Belmont; Peter M Izmirly; Ming Wu; Sean Connery; Fernanda Payan-Schober; Richard A Furie; Celine C Berthier; Maria Dall'Era; Kerry Cho; Diane L Kamen; Kenneth Kalunian; Jennifer Anolik; Mariko Ishimori; Michael H Weisman; Michelle A Petri; Jill P Buyon
Journal:  Lupus Sci Med       Date:  2021-08
  4 in total

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