Literature DB >> 31499844

Measurement of anomalous diffusion using recurrent neural networks.

Stefano Bo1, Falko Schmidt2, Ralf Eichhorn1, Giovanni Volpe2.   

Abstract

Anomalous diffusion occurs in many physical and biological phenomena, when the growth of the mean squared displacement (MSD) with time has an exponent different from one. We show that recurrent neural networks (RNNs) can efficiently characterize anomalous diffusion by determining the exponent from a single short trajectory, outperforming the standard estimation based on the MSD when the available data points are limited, as is often the case in experiments. Furthermore, the RNNs can handle more complex tasks where there are no standard approaches, such as determining the anomalous diffusion exponent from a trajectory sampled at irregular times, and estimating the switching time and anomalous diffusion exponents of an intermittent system that switches between different kinds of anomalous diffusion. We validate our method on experimental data obtained from subdiffusive colloids trapped in speckle light fields and superdiffusive microswimmers.

Entities:  

Year:  2019        PMID: 31499844     DOI: 10.1103/PhysRevE.100.010102

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  5 in total

1.  NOBIAS: Analyzing anomalous diffusion in single-molecule tracks with nonparametric Bayesian inference.

Authors:  Ziyuan Chen; Laurent Geffroy; Julie S Biteen
Journal:  Front Bioinform       Date:  2021-09-10

2.  Impact of Feature Choice on Machine Learning Classification of Fractional Anomalous Diffusion.

Authors:  Hanna Loch-Olszewska; Janusz Szwabiński
Journal:  Entropy (Basel)       Date:  2020-12-19       Impact factor: 2.524

3.  Learning self-driven collective dynamics with graph networks.

Authors:  Rui Wang; Feiteng Fang; Jiamei Cui; Wen Zheng
Journal:  Sci Rep       Date:  2022-01-11       Impact factor: 4.379

4.  Detection of Anomalous Diffusion with Deep Residual Networks.

Authors:  Miłosz Gajowczyk; Janusz Szwabiński
Journal:  Entropy (Basel)       Date:  2021-05-22       Impact factor: 2.524

5.  Single-particle diffusional fingerprinting: A machine-learning framework for quantitative analysis of heterogeneous diffusion.

Authors:  Henrik D Pinholt; Søren S-R Bohr; Josephine F Iversen; Wouter Boomsma; Nikos S Hatzakis
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-03       Impact factor: 11.205

  5 in total

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