Literature DB >> 31496229

Local Enrichment of Unsaturated Chains around the A2A Adenosine Receptor.

Lewen Yang1, Edward Lyman2,3.   

Abstract

Two 15 μs all-atom simulations of the A2A adenosine receptor were obtained in a ternary mixture of cholesterol, saturated phosphatidylcholine lipids, and unsaturated phosphatidylcholine lipids. An analysis of local lipid solvation is reported on the basis of a Voronoi tessellation of the upper and lower leaflets, identifying first and second solvation shells. The local environments of both the inactive state and the partially active state of the receptor are significantly enriched with unsaturated chains but depleted of cholesterol and saturated chains, relative to the bulk membrane composition. In spite of the local depletion of cholesterol, the partially active receptor binds cholesterol at three locations during the entire simulation trajectory. These long-lived interactions represent the extreme of a very broad distribution of first-solvation shell lipid lifetimes, confounding sharp distinctions between lipid interactions. The broad distributions of lifetimes also make equilibrating the local lipid environment difficult, necessitating long simulation times.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31496229      PMCID: PMC7722239          DOI: 10.1021/acs.biochem.9b00607

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  51 in total

1.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

2.  A molecular theory of lipid-protein interactions in the plasma lipoproteins.

Authors:  J P Segrest; R L Jackson; J D Morrisett; A M Gotto
Journal:  FEBS Lett       Date:  1974-01-15       Impact factor: 4.124

3.  Cholesterol-Dependent Bending Energy Is Important in Cholesterol Distribution of the Plasma Membrane.

Authors:  D W Allender; A J Sodt; M Schick
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

4.  Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy.

Authors:  Olivier Soubias; Klaus Gawrisch
Journal:  J Am Chem Soc       Date:  2005-09-28       Impact factor: 15.419

5.  The lipid phase preference of the adenosine A2A receptor depends on its ligand binding state.

Authors:  M Gertrude Gutierrez; Jacob Deyell; Kate L White; Lucia C Dalle Ore; Vadim Cherezov; Raymond C Stevens; Noah Malmstadt
Journal:  Chem Commun (Camb)       Date:  2019-05-14       Impact factor: 6.222

6.  Interfacial Binding Sites for Cholesterol on G Protein-Coupled Receptors.

Authors:  Anthony G Lee
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

Review 7.  Acyl chain conformations in phospholipid bilayers: a comparative study of docosahexaenoic acid and saturated fatty acids.

Authors:  Scott E Feller
Journal:  Chem Phys Lipids       Date:  2008-02-29       Impact factor: 3.329

8.  A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor.

Authors:  Michael A Hanson; Vadim Cherezov; Mark T Griffith; Christopher B Roth; Veli-Pekka Jaakola; Ellen Y T Chien; Jeffrey Velasquez; Peter Kuhn; Raymond C Stevens
Journal:  Structure       Date:  2008-06       Impact factor: 5.006

9.  Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel.

Authors:  Matthias R Schmidt; Phillip J Stansfeld; Stephen J Tucker; Mark S P Sansom
Journal:  Biochemistry       Date:  2012-12-28       Impact factor: 3.321

10.  Cryo-electron microscopy structure of the TRPV2 ion channel.

Authors:  Lejla Zubcevic; Mark A Herzik; Ben C Chung; Zhirui Liu; Gabriel C Lander; Seok-Yong Lee
Journal:  Nat Struct Mol Biol       Date:  2016-01-18       Impact factor: 15.369

View more
  4 in total

Review 1.  Regulation of membrane protein structure and function by their lipid nano-environment.

Authors:  Ilya Levental; Ed Lyman
Journal:  Nat Rev Mol Cell Biol       Date:  2022-09-02       Impact factor: 113.915

2.  Activation of G-protein-coupled receptors is thermodynamically linked to lipid solvation.

Authors:  Alison N Leonard; Edward Lyman
Journal:  Biophys J       Date:  2021-02-26       Impact factor: 4.033

Review 3.  The Role of the Membrane in Transporter Folding and Activity.

Authors:  Melanie Ernst; Janice L Robertson
Journal:  J Mol Biol       Date:  2021-06-15       Impact factor: 6.151

4.  Activation of adenosine A2A receptor by lipids from docosahexaenoic acid revealed by NMR.

Authors:  Takuya Mizumura; Keita Kondo; Masatoshi Kurita; Yutaka Kofuku; Mei Natsume; Shunsuke Imai; Yutaro Shiraishi; Takumi Ueda; Ichio Shimada
Journal:  Sci Adv       Date:  2020-03-18       Impact factor: 14.136

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.