Literature DB >> 31483909

Drug Syntheses Beyond the Rule of 5.

Mohit Tyagi1, Fabio Begnini1, Vasanthanathan Poongavanam1, Bradley C Doak2, Jan Kihlberg1.   

Abstract

Drugs in the chemical space beyond the rule of 5 (bRo5) can modulate targets with difficult binding sites while retaining cell permeability and oral absorption. Reviewing the syntheses of bRo5 drugs approved since 1990 highlights synthetic chemistry's contribution to drug discovery in this space. Initially, bRo5 drugs were mainly natural products and semi-synthetic derivatives. Later, peptidomimetics and de novo designed compounds, that include up to seven chiral centres and macrocyclic rings became dominant. These drugs are prepared by total synthesis, sometimes by routes of more than 25 steps with stereocentres originating from the chiral pool, or being installed by chiral induction or enzymatic resolution. Interestingly, ring-closing metathesis proved to be the method of choice for macrocyclisation in hepatitis C virus protease inhibitors. We conclude that structural simplification, planning of synthetic routes regarding incorporation of stereocentres and macrocyclisation, as well as incorporation of structural knowledge and consideration of chameleonic properties in design, should facilitate drug discovery in bRo5 space.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  beyond rule of 5; drugs; macrocycles; metathesis; synthesis

Mesh:

Substances:

Year:  2019        PMID: 31483909     DOI: 10.1002/chem.201902716

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  10 in total

Review 1.  Drug Design by Pharmacophore and Virtual Screening Approach.

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2.  Steering New Drug Discovery Campaigns: Permeability, Solubility, and Physicochemical Properties in the bRo5 Chemical Space.

Authors:  Giulia Caron; Jan Kihlberg; Gilles Goetz; Ekaterina Ratkova; Vasanthanathan Poongavanam; Giuseppe Ermondi
Journal:  ACS Med Chem Lett       Date:  2021-01-05       Impact factor: 4.345

3.  Discovery of an Allosteric Ligand Binding Site in SMYD3 Lysine Methyltransferase.

Authors:  Vladimir O Talibov; Edoardo Fabini; Edward A FitzGerald; Daniele Tedesco; Daniela Cederfeldt; Martin J Talu; Moira M Rachman; Filip Mihalic; Elisabetta Manoni; Marina Naldi; Paola Sanese; Giovanna Forte; Martina Lepore Signorile; Xavier Barril; Cristiano Simone; Manuela Bartolini; Doreen Dobritzsch; Alberto Del Rio; U Helena Danielson
Journal:  Chembiochem       Date:  2021-02-11       Impact factor: 3.164

4.  PROTACs and Building Blocks: The 2D Chemical Space in Very Early Drug Discovery.

Authors:  Giuseppe Ermondi; Diego Garcia-Jimenez; Giulia Caron
Journal:  Molecules       Date:  2021-01-28       Impact factor: 4.411

Review 5.  Scanning Protein Surfaces with DNA-Encoded Libraries.

Authors:  Verena B K Kunig; Marco Potowski; Mateja Klika Škopić; Andreas Brunschweiger
Journal:  ChemMedChem       Date:  2020-12-28       Impact factor: 3.466

Review 6.  Macrocyclic DNA-encoded chemical libraries: a historical perspective.

Authors:  Louise Plais; Jörg Scheuermann
Journal:  RSC Chem Biol       Date:  2021-10-29

Review 7.  Towards the sustainable discovery and development of new antibiotics.

Authors:  Marcus Miethke; Marco Pieroni; Tilmann Weber; Mark Brönstrup; Peter Hammann; Ludovic Halby; Paola B Arimondo; Philippe Glaser; Bertrand Aigle; Helge B Bode; Rui Moreira; Yanyan Li; Andriy Luzhetskyy; Marnix H Medema; Jean-Luc Pernodet; Marc Stadler; José Rubén Tormo; Olga Genilloud; Andrew W Truman; Kira J Weissman; Eriko Takano; Stefano Sabatini; Evi Stegmann; Heike Brötz-Oesterhelt; Wolfgang Wohlleben; Myriam Seemann; Martin Empting; Anna K H Hirsch; Brigitta Loretz; Claus-Michael Lehr; Alexander Titz; Jennifer Herrmann; Timo Jaeger; Silke Alt; Thomas Hesterkamp; Mathias Winterhalter; Andrea Schiefer; Kenneth Pfarr; Achim Hoerauf; Heather Graz; Michael Graz; Mika Lindvall; Savithri Ramurthy; Anders Karlén; Maarten van Dongen; Hrvoje Petkovic; Andreas Keller; Frédéric Peyrane; Stefano Donadio; Laurent Fraisse; Laura J V Piddock; Ian H Gilbert; Heinz E Moser; Rolf Müller
Journal:  Nat Rev Chem       Date:  2021-08-19       Impact factor: 34.571

Review 8.  A story of peptides, lipophilicity and chromatography - back and forth in time.

Authors:  Vanessa Erckes; Christian Steuer
Journal:  RSC Med Chem       Date:  2022-03-22

9.  Betulinic acid triggers apoptosis and inhibits migration and invasion of gastric cancer cells by impairing EMT progress.

Authors:  Yun Chen; Xiongjian Wu; Chi Liu; Yun Zhou
Journal:  Cell Biochem Funct       Date:  2020-04-13       Impact factor: 3.685

Review 10.  Design and Synthesis of Simplified Polyketide Analogs: New Modalities beyond the Rule of 5.

Authors:  Dirk Menche
Journal:  ChemMedChem       Date:  2021-05-05       Impact factor: 3.466

  10 in total

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