Literature DB >> 31481609

Widespread male sex bias in mammal fossil and museum collections.

Graham Gower1, Lindsey E Fenderson2, Alexander T Salis2, Kristofer M Helgen3, Ayla L van Loenen2, Holly Heiniger2, Emilia Hofman-Kamińska4, Rafał Kowalczyk4, Kieren J Mitchell2, Bastien Llamas2, Alan Cooper1.   

Abstract

A recent study of mammoth subfossil remains has demonstrated the potential of using relatively low-coverage high-throughput DNA sequencing to genetically sex specimens, revealing a strong male-biased sex ratio [P. Pečnerová et al., Curr. Biol. 27, 3505-3510.e3 (2017)]. Similar patterns were predicted for steppe bison, based on their analogous female herd-based structure. We genetically sexed subfossil remains of 186 Holarctic bison (Bison spp.), and also 91 brown bears (Ursus arctos), which are not female herd-based, and found that ∼75% of both groups were male, very close to the ratio observed in mammoths (72%). This large deviation from a 1:1 ratio was unexpected, but we found no evidence for sex differences with respect to DNA preservation, sample age, material type, or overall spatial distribution. We further examined ratios of male and female specimens from 4 large museum mammal collections and found a strong male bias, observable in almost all mammalian orders. We suggest that, in mammals at least, 1) wider male geographic ranges can lead to considerably increased chances of detection in fossil studies, and 2) sexual dimorphic behavior or appearance can facilitate a considerable sex bias in fossil and modern collections, on a previously unacknowledged scale. This finding has major implications for a wide range of studies of fossil and museum material.

Entities:  

Keywords:  ancient DNA; bison; brown bears; sex bias; sex ratio

Mesh:

Substances:

Year:  2019        PMID: 31481609      PMCID: PMC6754617          DOI: 10.1073/pnas.1903275116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

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Journal:  Am J Phys Anthropol       Date:  1999-09       Impact factor: 2.868

2.  Ancient DNA: do it right or not at all.

Authors:  A Cooper; H N Poinar
Journal:  Science       Date:  2000-08-18       Impact factor: 47.728

3.  Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis.

Authors:  Michael Bunce; Trevor H Worthy; Tom Ford; Will Hoppitt; Eske Willerslev; Alexei Drummond; Alan Cooper
Journal:  Nature       Date:  2003-09-11       Impact factor: 49.962

4.  Rise and fall of the Beringian steppe bison.

Authors:  Beth Shapiro; Alexei J Drummond; Andrew Rambaut; Michael C Wilson; Paul E Matheus; Andrei V Sher; Oliver G Pybus; M Thomas P Gilbert; Ian Barnes; Jonas Binladen; Eske Willerslev; Anders J Hansen; Gennady F Baryshnikov; James A Burns; Sergei Davydov; Jonathan C Driver; Duane G Froese; C Richard Harington; Grant Keddie; Pavel Kosintsev; Michael L Kunz; Larry D Martin; Robert O Stephenson; John Storer; Richard Tedford; Sergei Zimov; Alan Cooper
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

5.  Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Authors:  Kerstin Lindblad-Toh; Claire M Wade; Tarjei S Mikkelsen; Elinor K Karlsson; David B Jaffe; Michael Kamal; Michele Clamp; Jean L Chang; Edward J Kulbokas; Michael C Zody; Evan Mauceli; Xiaohui Xie; Matthew Breen; Robert K Wayne; Elaine A Ostrander; Chris P Ponting; Francis Galibert; Douglas R Smith; Pieter J DeJong; Ewen Kirkness; Pablo Alvarez; Tara Biagi; William Brockman; Jonathan Butler; Chee-Wye Chin; April Cook; James Cuff; Mark J Daly; David DeCaprio; Sante Gnerre; Manfred Grabherr; Manolis Kellis; Michael Kleber; Carolyne Bardeleben; Leo Goodstadt; Andreas Heger; Christophe Hitte; Lisa Kim; Klaus-Peter Koepfli; Heidi G Parker; John P Pollinger; Stephen M J Searle; Nathan B Sutter; Rachael Thomas; Caleb Webber; Jennifer Baldwin; Adal Abebe; Amr Abouelleil; Lynne Aftuck; Mostafa Ait-Zahra; Tyler Aldredge; Nicole Allen; Peter An; Scott Anderson; Claudel Antoine; Harindra Arachchi; Ali Aslam; Laura Ayotte; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Mostafa Benamara; Aaron Berlin; Daniel Bessette; Berta Blitshteyn; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Adam Brown; Patrick Cahill; Nadia Calixte; Jody Camarata; Yama Cheshatsang; Jeffrey Chu; Mieke Citroen; Alville Collymore; Patrick Cooke; Tenzin Dawoe; Riza Daza; Karin Decktor; Stuart DeGray; Norbu Dhargay; Kimberly Dooley; Kathleen Dooley; Passang Dorje; Kunsang Dorjee; Lester Dorris; Noah Duffey; Alan Dupes; Osebhajajeme Egbiremolen; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Patricia Ferreira; Sheila Fisher; Mike FitzGerald; Karen Foley; Chelsea Foley; Alicia Franke; Dennis Friedrich; Diane Gage; Manuel Garber; Gary Gearin; Georgia Giannoukos; Tina Goode; Audra Goyette; Joseph Graham; Edward Grandbois; Kunsang Gyaltsen; Nabil Hafez; Daniel Hagopian; Birhane Hagos; Jennifer Hall; Claire Healy; Ryan Hegarty; Tracey Honan; Andrea Horn; Nathan Houde; Leanne Hughes; Leigh Hunnicutt; M Husby; Benjamin Jester; Charlien Jones; Asha Kamat; Ben Kanga; Cristyn Kells; Dmitry Khazanovich; Alix Chinh Kieu; Peter Kisner; Mayank Kumar; Krista Lance; Thomas Landers; Marcia Lara; William Lee; Jean-Pierre Leger; Niall Lennon; Lisa Leuper; Sarah LeVine; Jinlei Liu; Xiaohong Liu; Yeshi Lokyitsang; Tashi Lokyitsang; Annie Lui; Jan Macdonald; John Major; Richard Marabella; Kebede Maru; Charles Matthews; Susan McDonough; Teena Mehta; James Meldrim; Alexandre Melnikov; Louis Meneus; Atanas Mihalev; Tanya Mihova; Karen Miller; Rachel Mittelman; Valentine Mlenga; Leonidas Mulrain; Glen Munson; Adam Navidi; Jerome Naylor; Tuyen Nguyen; Nga Nguyen; Cindy Nguyen; Thu Nguyen; Robert Nicol; Nyima Norbu; Choe Norbu; Nathaniel Novod; Tenchoe Nyima; Peter Olandt; Barry O'Neill; Keith O'Neill; Sahal Osman; Lucien Oyono; Christopher Patti; Danielle Perrin; Pema Phunkhang; Fritz Pierre; Margaret Priest; Anthony Rachupka; Sujaa Raghuraman; Rayale Rameau; Verneda Ray; Christina Raymond; Filip Rege; Cecil Rise; Julie Rogers; Peter Rogov; Julie Sahalie; Sampath Settipalli; Theodore Sharpe; Terrance Shea; Mechele Sheehan; Ngawang Sherpa; Jianying Shi; Diana Shih; Jessie Sloan; Cherylyn Smith; Todd Sparrow; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Sabrina Stone; Sean Sykes; Pierre Tchuinga; Pema Tenzing; Senait Tesfaye; Dawa Thoulutsang; Yama Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Vijay Venkataraman; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Shuli Yang; Xiaoping Yang; Geneva Young; Qing Yu; Joanne Zainoun; Lisa Zembek; Andrew Zimmer; Eric S Lander
Journal:  Nature       Date:  2005-12-08       Impact factor: 49.962

6.  Inversely density-dependent natal dispersal in brown bears Ursus arctos.

Authors:  Ole-Gunnar Støen; Andreas Zedrosser; Solve Saebø; Jon E Swenson
Journal:  Oecologia       Date:  2006-02-18       Impact factor: 3.225

7.  Tackling the characterization of canine chromosomal breakpoints with an integrated in-situ/in-silico approach: the canine PAR and PAB.

Authors:  Andrea C Young; Ewen F Kirkness; Matthew Breen
Journal:  Chromosome Res       Date:  2008-11-16       Impact factor: 5.239

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:  Christine G Elsik; Ross L Tellam; Kim C Worley; Richard A Gibbs; Donna M Muzny; George M Weinstock; David L Adelson; Evan E Eichler; Laura Elnitski; Roderic Guigó; Debora L Hamernik; Steve M Kappes; Harris A Lewin; David J Lynn; Frank W Nicholas; Alexandre Reymond; Monique Rijnkels; Loren C Skow; Evgeny M Zdobnov; Lawrence Schook; James Womack; Tyler Alioto; Stylianos E Antonarakis; Alex Astashyn; Charles E Chapple; Hsiu-Chuan Chen; Jacqueline Chrast; Francisco Câmara; Olga Ermolaeva; Charlotte N Henrichsen; Wratko Hlavina; Yuri Kapustin; Boris Kiryutin; Paul Kitts; Felix Kokocinski; Melissa Landrum; Donna Maglott; Kim Pruitt; Victor Sapojnikov; Stephen M Searle; Victor Solovyev; Alexandre Souvorov; Catherine Ucla; Carine Wyss; Juan M Anzola; Daniel Gerlach; Eran Elhaik; Dan Graur; Justin T Reese; Robert C Edgar; John C McEwan; Gemma M Payne; Joy M Raison; Thomas Junier; Evgenia V Kriventseva; Eduardo Eyras; Mireya Plass; Ravikiran Donthu; Denis M Larkin; James Reecy; Mary Q Yang; Lin Chen; Ze Cheng; Carol G Chitko-McKown; George E Liu; Lakshmi K Matukumalli; Jiuzhou Song; Bin Zhu; Daniel G Bradley; Fiona S L Brinkman; Lilian P L Lau; Matthew D Whiteside; Angela Walker; Thomas T Wheeler; Theresa Casey; J Bruce German; Danielle G Lemay; Nauman J Maqbool; Adrian J Molenaar; Seongwon Seo; Paul Stothard; Cynthia L Baldwin; Rebecca Baxter; Candice L Brinkmeyer-Langford; Wendy C Brown; Christopher P Childers; Timothy Connelley; Shirley A Ellis; Krista Fritz; Elizabeth J Glass; Carolyn T A Herzig; Antti Iivanainen; Kevin K Lahmers; Anna K Bennett; C Michael Dickens; James G R Gilbert; Darren E Hagen; Hanni Salih; Jan Aerts; Alexandre R Caetano; Brian Dalrymple; Jose Fernando Garcia; Clare A Gill; Stefan G Hiendleder; Erdogan Memili; Diane Spurlock; John L Williams; Lee Alexander; Michael J Brownstein; Leluo Guan; Robert A Holt; Steven J M Jones; Marco A Marra; Richard Moore; Stephen S Moore; Andy Roberts; Masaaki Taniguchi; Richard C Waterman; Joseph Chacko; Mimi M Chandrabose; 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Robert Ward; Rosemarie Weikard; Thomas H Welsh; Stephen N White; Laurens G Wilming; Kris R Wunderlich; Jianqi Yang; Feng-Qi Zhao
Journal:  Science       Date:  2009-04-24       Impact factor: 47.728

10.  A whole-genome assembly of the domestic cow, Bos taurus.

Authors:  Aleksey V Zimin; Arthur L Delcher; Liliana Florea; David R Kelley; Michael C Schatz; Daniela Puiu; Finnian Hanrahan; Geo Pertea; Curtis P Van Tassell; Tad S Sonstegard; Guillaume Marçais; Michael Roberts; Poorani Subramanian; James A Yorke; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-04-24       Impact factor: 13.583

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Journal:  Nature       Date:  2022-06-29       Impact factor: 69.504

3.  How low can you go? Introducing SeXY: sex identification from low-quantity sequencing data despite lacking assembled sex chromosomes.

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Journal:  Ecol Evol       Date:  2022-08-25       Impact factor: 3.167

4.  Origins and genetic legacy of prehistoric dogs.

Authors:  Anders Bergström; Laurent Frantz; Ryan Schmidt; Erik Ersmark; Ophelie Lebrasseur; Linus Girdland-Flink; Audrey T Lin; Jan Storå; Karl-Göran Sjögren; David Anthony; Ekaterina Antipina; Sarieh Amiri; Guy Bar-Oz; Vladimir I Bazaliiskii; Jelena Bulatović; Dorcas Brown; Alberto Carmagnini; Tom Davy; Sergey Fedorov; Ivana Fiore; Deirdre Fulton; Mietje Germonpré; James Haile; Evan K Irving-Pease; Alexandra Jamieson; Luc Janssens; Irina Kirillova; Liora Kolska Horwitz; Julka Kuzmanovic-Cvetković; Yaroslav Kuzmin; Robert J Losey; Daria Ložnjak Dizdar; Marjan Mashkour; Mario Novak; Vedat Onar; David Orton; Maja Pasarić; Miljana Radivojević; Dragana Rajković; Benjamin Roberts; Hannah Ryan; Mikhail Sablin; Fedor Shidlovskiy; Ivana Stojanović; Antonio Tagliacozzo; Katerina Trantalidou; Inga Ullén; Aritza Villaluenga; Paula Wapnish; Keith Dobney; Anders Götherström; Anna Linderholm; Love Dalén; Ron Pinhasi; Greger Larson; Pontus Skoglund
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Journal:  Sci Rep       Date:  2021-05-27       Impact factor: 4.379

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