| Literature DB >> 31478352 |
Lili Han1, Sulaiya Husaiyin1, Chunhua Ma1, Mayinuer Niyazi1.
Abstract
BACKGROUND: Cervical cancer is the second most common malignant tumor in women, and its invasion and metastasis are regulated by tumor angiogenic growth factors and their cognate receptors. In this study, we explored the relationship between genetic polymorphisms of angiogenesis-related genes (VEGF-C, VEGFR-2, and VEGFR-3) and the risk of cervical cancer in Chinese Uygur population.Entities:
Keywords: zzm321990VEGF-Czzm321990; zzm321990VEGFR-2zzm321990; zzm321990VEGFR-3zzm321990; cervical cancer; genetics polymorphisms
Mesh:
Substances:
Year: 2019 PMID: 31478352 PMCID: PMC6785432 DOI: 10.1002/mgg3.899
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Primers used for this study
| SNP_ID | 2nd PCRP | 1st PCRP | UEP DIR | UEP SEQ |
|---|---|---|---|---|
| rs10006115 | ACGTTGGATGATGGCAGCCATATGGAGTTG | ACGTTGGATGTCCACTGCAGAAGAAATGGC | R | aggaTCTTCTCTCTGCCAACTC |
| rs4604006 | ACGTTGGATGACATACTCATGTTTGTACCC | ACGTTGGATGGTGTGGCATGAAACAAAAGC | R | ggagGTTTGTACCCAATCCTTTG |
| rs11955717 | ACGTTGGATGCGTCACCAAACAGCATTTCG | ACGTTGGATGGAGGTTTGAATTTACGTGGC | R | CAAGGTAATTAAGTAAAAGGTGTC |
| rs12646659 | ACGTTGGATGAAGCTTGGCTGTCTCTATGG | ACGTTGGATGATGTTCCCACTGAGAACAAC | R | GTCTCTATGGTTATATCTTCAAATA |
Abbreviations: PCR, polymerase chain reaction; UEP, unextended mini‐sequencing primer.
General characteristics the of this study population
| Variables | Case | Control | Total |
|
|---|---|---|---|---|
| Total | 342 | 498 | ||
| Age | ||||
| ≤43 | 166 (49%) | 235 (47%) | 401 | >.05 |
| >43 | 176 (51%) | 263 (53%) | 439 | |
| Mean age ± | 43.27 ± 11.78 | 43.46 ± 13.03 | ||
| T stage | ||||
| III + IV | 80 (23%) | |||
| I + II | 132 (39%) | |||
| Unavailable | 130 (38%) | |||
p‐values were calculated from two‐sided chi‐squared test/Fisher's exact test; p < .05 indicates statistical significance.
Basic information about candidate SNPs and association with the risk of cervical cancer in allele model
| SNP | Chr | Position | Gene(s) | Role | Alleles | Frequency (MAF) |
| OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | |||||||||
| rs10006115 | 4 | 55,080,187 |
| ncRNA_intronic | G/T | 0.056 | 0.049 | .107 | 1.14 (0.74–1.76) | .563 |
| rs4604006 | 4 | 176,687,621 |
| ncRNA_intronic | C/T | 0.342 | 0.365 | .067 | 0.90 (0.74–1.11) | .326 |
| rs12646659 | 4 | 176,764,117 |
| Intronic | C/G | 0.013 | 0.031 | 1.000 | 0.41 (0.20–0.87) |
|
| rs11955717 | 5 | 180,606,639 |
| Intronic | C/T | 0.329 | 0.336 | .070 | 0.97 (0.79–1.19) | .752 |
Abbreviations: 95% CI, 95% confidence interval; Alleles A/B, Minor/Major alleles; HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; OR, odds ratio; SNP, single‐nucleotide polymorphism.
p‐values were calculated with Pearson's χ2 tests.
p < .05 indicates statistical significance.
Logistic regression analysis of the association between prominent SNPs and cervical cancer risk
| Gene | SNP | Model | Genotype | Control | Case | Without adjustment | With adjustment | ||
|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||||||
|
| rs10006115 | Codominant | G/G | 452 (90.8%) | 305 (89.2%) | 1.00 | 1.00 | ||
| G/T | 43 (8.6%) | 36 (10.5%) | 1.24 (0.78–1.98) | .364 | 1.24 (0.78–1.98) | .363 | |||
| T/T | 3 (0.6%) | 1 (0.3%) | 0.49 (0.05–4.77) | .542 | 0.49 (0.05–4.78) | .543 | |||
| Dominant | G/G | 452 (90.8%) | 305 (89.2%) | 1.00 | .451 | 1.00 | .449 | ||
| G/T‐T/T | 46 (9.2%0 | 37 (10.8) | 1.19 (0.76–1.88) | 1.19 (0.76–1.88) | |||||
| Recessive | G/G‐G/T | 495 (99.4%) | 341 (99.7%) | 1.00 | .530 | 1.00 | .531 | ||
| T/T | 3 (0.6%) | 1 (0.3%) | 0.48 (0.05–4.67) | 0.48 (0.05–4.68) | |||||
| Log‐additive | — | — | — | 1.13 (0.74–1.73) | .572 | 1.13 (0.74–1.73) | .570 | ||
|
| rs4604006 | Codominant | C/C | 210 (42.2%) | 146 (42.7%) | 1.00 | 1.00 | ||
| C/T | 212 (42.6%) | 158 (46.2%) | 1.07 (0.80–1.44) | .644 | 1.07 (0.80–1.44) | .640 | |||
| T/T | 76 (15.3%) | 38 (11.1%) | 0.72 (0.46–1.12) | .145 | 0.72 (0.46–1.12) | .143 | |||
| Dominant | C/C | 210 (42.2%) | 146 (42.7%) | 1.00 | .881 | 1.00 | .882 | ||
| T/C‐C/C | 288 (57.8%) | 196 (57.3%) | 0.98 (0.74–1.29) | 0.98 (0.74–1.29) | |||||
| Recessive | C/C ‐T/C | 422 (84.7%) | 304 (88.9%) | 1.00 | .086 | 1.00 | .084 | ||
| T/T | 76 (15.3%) | 38 (11.1%) | 0.69 (0.46–1.05) | 0.69 (0.46–1.05) | |||||
| Log‐additive | — | — | — | 0.91 (0.74–1.11) | .336 | 0.91 (0.74–1.11) | .335 | ||
| rs12646659 | Codominant | C/C | 464 (93.5%) | 333 (97.4%) | 1.00 | 1.00 | |||
| G/C | 31 (6.3%) | 9 (2.6%) | — | — | |||||
| G/G | 0 (0.0%) | 0 (0.0%) | — | — | |||||
| Dominant | C/C | 464 (93.5%) | 333 (97.4%) | 1.00 |
| 1.00 |
| ||
| C/G‐G/G | 31 (6.3%) | 9 (2.6%) | 0.40 (0.19–0.86) | 0.40 (0.19–0.86) | |||||
| Recessive | C/C‐G/C | 495 (100.0%) | 342 (100.0%) | 1.00 | 1.00 | ||||
| G/G | 0 (0.0%) | 0 (0.0%) | — | — | |||||
| Log‐additive | — | — | — | 0.40 (0.19–0.86) |
| 0.40 (0.19–0.86) |
| ||
|
| rs11955717 | Codominant | T/T | 227 (45.9%) | 157 (45.9%) | 1.00 | 1.00 | ||
| T/C | 203 (41.0%) | 145 (42.4%) | 1.03 (0.77–1.39) | .830 | 1.03 (0.77–1.39) | .828 | |||
| C/C | 65 (13.1%) | 40 (11.7%) | 0.89 (0.57–1.39) | .606 | 0.89 (0.57–1.39) | .609 | |||
| Dominant | T/T | 227 (45.9%) | 157 (45.9%) | 1.00 | .989 | 1.00 | .992 | ||
| T/C‐C/C | 268 (54.1%) | 185 (54.1%) | 1.00 (0.76–1.32) | 1.00 (0.76–1.32) | |||||
| Recessive | T/T‐T/C | 430 (86.9%) | 302 (88.3%) | 1.00 | .538 | 1.00 | .541 | ||
| C/C | 65 (13.1%) | 40 (11.7%) | 0.88 (0.58–1.33) | 0.88 (0.58–1.34) | |||||
| Log‐additive | — | — | — | 0.97 (0.79–1.18) | .759 | 0.97 (0.79–1.19) | .763 | ||
Abbreviations: 95% CI, 95% confidence interval; Alleles A/B, Minor/Major alleles; HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; OR, odds ratio; SNP, single‐nucleotide polymorphism.
p‐values were calculated with Pearson's χ2 tests.
p < .05 indicates statistical significance.
Relationship of prominent SNPs with the cervical cancer risk stratified by age
| Gene | SNP | Model | Genotype | Age ≤ 43 | Age > 43 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | OR (95% CI) |
| Control | Case | OR (95% CI) |
| ||||
|
| rs10006115 | Codominant | G/G | 215 (91.5%) | 149 (89.8%) | 1.00 | 237 (90.1%) | 156 (88.6%) | 1.00 | ||
| G/T | 19 (8.1%) | 17 (10.2%) | 1.28 (0.64–2.54) | .466 | 24 (9.1%) | 19 (10.8%) | 1.19 (0.63–2.25) | .586 | |||
| T/T | 1 (0.4%) | 0 (0.0%) | / | .999 | 2 (0.8%) | 1 (0.6%) | 0.73 (0.07–8.11) | .795 | |||
| Dominant | G/G | 215 (91.5%) | 149 (89.8%) | 1.00 | .556 | 237 (90.1%) | 156 (88.6%) | 1.00 | .644 | ||
| G/T‐T/T | 20 (8.5%) | 17 (10.2%) | 1.21 (0.61–2.4) | 26 (9.9%) | 20 (11.4%) | 1.16 (0.62–2.15) | |||||
| Recessive | G/G‐G/T | 234 (99.6%) | 166 (100.0%) | 1.00 | .999 | 261 (99.2%) | 175 (99.4%) | 1.00 | .784 | ||
| T/T | 1 (0.4%) | 0 (0.0%) | / | 2 (0.8%) | 1 (0.6%) | 0.71 (0.06–7.95) | |||||
| Log‐additive | — | — | — | 1.14 (0.59–2.2) | .670 | — | — | 1.11 (0.63–1.95) | .723 | ||
| Allele | G | 449 (95.5%) | 315 (94.9%) | 1.00 | .668 | 498 (94.7%) | 331 (94.0%) | 1.00 | .684 | ||
| T | 21 (4.5%) | 17 (5.1%) | 1.15 (0.6–2.22) | 28 (5.3%) | 21 (6.0%) | 1.13 (0.63–2.02) | |||||
|
| rs4604006 | Codominant | C/C | 90 (38.3%) | 78 (47.0%) | 1.00 | 120 (45.6%) | 68 (38.6%) | 1.00 | ||
| C/T | 108 (46.0%) | 67 (40.4%) | 0.7 (0.46–1.09) | .128 | 104 (39.6%) | 91 (51.7%) | 1.55 (1.03–2.34) |
| |||
| T/T | 37 (15.7%) | 21 (12.6%) | 0.66 (0.36–1.22) | .178 | 39 (14.8%) | 17 (9.7%) | 0.77 (0.4–1.46) | .425 | |||
| Dominant | C/C | 90 (38.3%) | 78 (47.0%) | 1.00 | .083 | 120 (45.6%) | 68 (38.6%) | 1.00 | .141 | ||
| T/C‐C/C | 145 (61.7%) | 88 (53.0%) | 0.69 (0.46–1.04) | 143 (54.4%) | 108 (61.4%) | 1.34 (0.91–1.98) | |||||
| Recessive | C/C ‐T/C | 198 (84.3%) | 145 (87.4%) | 1.00 | .386 | 224 (85.2%) | 159 (90.3%) | 1.00 | .112 | ||
| T/T | 37 (15.7%) | 21 (12.6%) | 0.78 (0.44–1.4) | 39 (14.8%) | 17 (9.7%) | 0.61 (0.33–1.12) | |||||
| Log‐additive | — | — | — | 0.78 (0.59–1.04) | .097 | — | — | 1.04 (0.79–1.38) | .775 | ||
| Allele | T | 288 (61.3%) | 223 (67.2%) | .087 | 344 (65.4%) | 227 (64.5%) | .782 | ||||
| C | 182 (38.7%) | 109 (32.8%) | 0.77 (0.58–1.04)) | 182 (34.6%) | 125 (35.5%) | 1.04 (0.78–1.38) | |||||
| rs12646659 | Codominant | C/C | 218 (93.6%) | 160 (96.4%) | 1.00 | 246 (93.9%) | 173 (98.3%) | 1.00 | |||
| G/C | 15 (6.4%) | 6 (3.6%) | / | 16 (6.1%) | 3 (1.7%) | / | |||||
| G/G | 0 (0.0%) | 0 (0.0%) | / | 0 (0.0%) | 0 (0.0%) | / | |||||
| Dominant | C/C | 218 (93.6%) | 160 (96.4%) | 1.00 | .219 | 246 (93.9%) | 173 (98.3%) | 1.00 |
| ||
| C/G‐G/G | 15 (6.4%) | 6 (3.6%) | 0.56 (0.21–1.48) | 16 (6.1%) | 3 (1.7%) | 0.26 (0.08–0.92) | |||||
| Recessive | C/C‐G/C | 233 (100.0%) | 166 (100.0%) | 1.00 | 262 (100.0%) | 176 (100.0%) | 1.00 | ||||
| G/G | 0 (0.0%) | 0 (0.0%) | — | 0 (0.0%) | 0 (0.0%) | / | |||||
| Log‐additive | — | — | — | 0.56 (0.21–1.48) | .219 | — | — | 0.26 (0.08–0.92) |
| ||
| Allele | T | 451 (96.8%) | 326 (98.2%) | 1.00 | .220 | 508 (97.0%) | 349 (99.2%) | 1.00 |
| ||
| C | 15 (3.2%) | 6 (1.8%) | 0.55 (0.21–1.44) | 16 (3.0%) | 3 (0.8%) | 0.27 (0.08–0.94) | |||||
|
| rs11955717 | Codominant | T/T | 106 (45.3%) | 82 (49.4%) | 1.00 | 121 (46.4%) | 75 (42.6%) | 1.00 | ||
| T/C | 98 (41.9%) | 68 (41.0%) | 0.91 (0.59–1.38) | .614 | 105 (40.2%) | 77 (43.8%) | 1.19 (0.79–1.8) | .399 | |||
| C/C | 30 (12.8%) | 16 (9.6%) | 0.68 (0.35–1.34) | .278 | 35 (13.4%) | 24 (13.6%) | 1.11 (0.61–2.01) | .734 | |||
| Dominant | T/T | 106 (45.3%) | 82 (49.4%) | 1.00 | .419 | 121 (46.4%) | 75 (42.6%) | 1.00 | .419 | ||
| T/C‐C/C | 128 (54.7%) | 84 (50.6%) | 0.85 (0.57–1.27) | 140 (53.6%) | 101 (57.4%) | 1.17 (0.8–1.73) | |||||
| Recessive | T/T‐T/C | 204 (87.2%) | 150 (90.4%) | 1.00 | .327 | 226 (86.6%) | 152 (46.4%) | 1.00 | .953 | ||
| C/C | 30 (12.8%) | 16 (9.6%) | 0.72 (0.38–1.36) | 35 (13.4%) | 24 (86.4%) | 1.02 (0.58–1.78)) | |||||
| Log‐additiv e | — | — | — | 0.85 (0.63–1.15) | .290 | — | — | 1.09 (0.83–1.43) | .545 | ||
| Allele | T | 310 (66.2%) | 232 (69.9%) | 1.00 | .278 | 347 (66.5%) | 227 (64.5%) | 1.00 | .544 | ||
| C | 158 (33.8%) | 100 (30.1%) | 0.85 (0.62–1.15) | 175 (33.5%) | 125 (35.5%) | 1.09 (0.82–1.45) | |||||
Abbreviations: 95% CI; 95% confidence interval; Alleles A/B, Minor/Major alleles; HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; OR, odds ratio; SNP, single‐nucleotide polymorphism.
p‐values were calculated by unconditional logistic regression analysis with adjustments for age.
“/”means no data.
p < .05 indicates statistical significance.