Literature DB >> 31476126

Surface Shear Viscosity and Interleaflet Friction from Nonequilibrium Simulations of Lipid Bilayers.

Andrew Zgorski, Richard W Pastor1, Edward Lyman.   

Abstract

Nonequilibrium simulation protocols based on shear deformations are applied to determine the surface viscosity and interleaflet friction of lipid bilayers. At high shear rates, a non-Newtonian shear thinning regime is observed, but lower shear rates yield a Newtonian plateau and results that are consistent with equilibrium measurements based on fluctuation-dissipation theorems. Application to all-atom bilayers modeled with the CHARMM36 parameter set yields values for the surface viscosity that are consistent with microscopic measurements based on membrane protein diffusion but are approximately 10 times lower than more macroscopic experimental measurements. The interleaflet friction is about 10 times lower than experimental measurements. Trends across different lipids, temperatures, and ternary liquid-disordered phase mixtures produce results that are consistent with experimental diffusion constants. Application of the protocol to the liquid-ordered phase fails to yield a Newtonian plateau, suggesting more complex rheology.

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Year:  2019        PMID: 31476126      PMCID: PMC7473107          DOI: 10.1021/acs.jctc.9b00683

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  49 in total

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6.  Mechanical properties of anionic asymmetric bilayers from atomistic simulations.

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  6 in total

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