Literature DB >> 34550131

Curvature-driven feedback on aggregation-diffusion of proteins in lipid bilayers.

Arijit Mahapatra1, David Saintillan1, Padmini Rangamani1.   

Abstract

Membrane bending is an extensively studied problem from both modeling and experimental perspectives because of the wide implications of curvature generation in cell biology. Many of the curvature generating aspects in membranes can be attributed to interactions between proteins and membranes. These interactions include protein diffusion and formation of aggregates due to protein-protein interactions in the plane of the membrane. Recently, we developed a model that couples the in-plane flow of lipids and diffusion of proteins with the out-of-plane bending of the membrane. Building on this work, here, we focus on the role of explicit aggregation of proteins on the surface of the membrane in the presence of membrane bending and diffusion. We develop a comprehensive framework that includes lipid flow, membrane bending, the entropy of protein distribution, along with an explicit aggregation potential and derive the governing equations for the coupled system. We compare this framework to the Cahn-Hillard formalism to predict the regimes in which the proteins form patterns on the membrane. We demonstrate the utility of this model using numerical simulations to predict how aggregation and diffusion, when coupled with curvature generation, can alter the landscape of membrane-protein interactions.

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Year:  2021        PMID: 34550131      PMCID: PMC8462121          DOI: 10.1039/d1sm00502b

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   4.046


  45 in total

1.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

2.  Fluid vesicles with viscous membranes in shear flow.

Authors:  Hiroshi Noguchi; Gerhard Gompper
Journal:  Phys Rev Lett       Date:  2004-12-13       Impact factor: 9.161

3.  Shape matters in protein mobility within membranes.

Authors:  François Quemeneur; Jon K Sigurdsson; Marianne Renner; Paul J Atzberger; Patricia Bassereau; David Lacoste
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

4.  Elastic properties of lipid bilayers: theory and possible experiments.

Authors:  W Helfrich
Journal:  Z Naturforsch C       Date:  1973 Nov-Dec       Impact factor: 1.649

5.  Growth dynamics of domains in ternary fluid vesicles.

Authors:  Miho Yanagisawa; Masayuki Imai; Tomomi Masui; Shigeyuki Komura; Takao Ohta
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

6.  Membrane shape modulates transmembrane protein distribution.

Authors:  Sophie Aimon; Andrew Callan-Jones; Alice Berthaud; Mathieu Pinot; Gilman E S Toombes; Patricia Bassereau
Journal:  Dev Cell       Date:  2014-01-27       Impact factor: 12.270

Review 7.  Lipid domain formation and dynamics in giant unilamellar vesicles explored by fluorescence correlation spectroscopy.

Authors:  Nicoletta Kahya; Dag Scherfeld; Kirsten Bacia; Petra Schwille
Journal:  J Struct Biol       Date:  2004-07       Impact factor: 2.867

8.  Coupled diffusion of peripherally bound peptides along the outer and inner membrane leaflets.

Authors:  Andreas Horner; Yuri N Antonenko; Peter Pohl
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

9.  The mechanochemistry of endocytosis.

Authors:  Jian Liu; Yidi Sun; David G Drubin; George F Oster
Journal:  PLoS Biol       Date:  2009-09-29       Impact factor: 8.029

Review 10.  Mechanisms shaping cell membranes.

Authors:  Michael M Kozlov; Felix Campelo; Nicole Liska; Leonid V Chernomordik; Siewert J Marrink; Harvey T McMahon
Journal:  Curr Opin Cell Biol       Date:  2014-04-18       Impact factor: 8.382

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