Literature DB >> 31473439

Structural transition of the nucleosome during chromatin remodeling and transcription.

Wataru Kobayashi1, Hitoshi Kurumizaka2.   

Abstract

In eukaryotes, the nucleosome is the basic unit of chromatin. Since the genomic DNA is tightly wrapped around the histone octamer in the nucleosome, its function is severely restricted in chromatin. To overcome the nucleosome barrier, the nucleosome structure must dynamically change during genomic DNA functions. Recent structural studies revealed that chromatin remodelers and RNA polymerase II drastically alter the nucleosome structures during the chromatin remodeling and transcription processes. These results provide important information for understanding how genes are properly regulated in eukaryotes. Here, we review the recent structural studies of nucleosome versatility and dynamics during chromatin remodeling and transcription by RNA polymerase II.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Year:  2019        PMID: 31473439     DOI: 10.1016/j.sbi.2019.07.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  UBR7 acts as a histone chaperone for post-nucleosomal histone H3.

Authors:  Ann K Hogan; Kizhakke M Sathyan; Alexander B Willis; Sakshi Khurana; Shashank Srivastava; Ewelina Zasadzińska; Alexander S Lee; Aaron O Bailey; Matthew N Gaynes; Jiehuan Huang; Justin Bodner; Celeste D Rosencrance; Kelvin A Wong; Marc A Morgan; Kyle P Eagen; Ali Shilatifard; Daniel R Foltz
Journal:  EMBO J       Date:  2021-11-17       Impact factor: 11.598

2.  The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex.

Authors:  Craig J Marshall; M Zuhaib Qayyum; Julie E Walker; Katsuhiko S Murakami; Thomas J Santangelo
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-02       Impact factor: 12.779

Review 3.  The Advances in Epigenetics for Cancer Radiotherapy.

Authors:  Yuexuan Wang; Yu Han; Yuzhen Jin; Qiang He; Zhicheng Wang
Journal:  Int J Mol Sci       Date:  2022-05-18       Impact factor: 6.208

Review 4.  Targeting the epigenetic regulation of antitumour immunity.

Authors:  Simon J Hogg; Paul A Beavis; Mark A Dawson; Ricky W Johnstone
Journal:  Nat Rev Drug Discov       Date:  2020-09-14       Impact factor: 84.694

Review 5.  Biological role and mechanism of chromatin readers in plants.

Authors:  Ray Scheid; Jiani Chen; Xuehua Zhong
Journal:  Curr Opin Plant Biol       Date:  2021-02-10       Impact factor: 9.396

6.  Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.

Authors:  Rina Hirano; Yasuhiro Arimura; Tomoya Kujirai; Mikihiro Shibata; Aya Okuda; Ken Morishima; Rintaro Inoue; Masaaki Sugiyama; Hitoshi Kurumizaka
Journal:  Commun Biol       Date:  2021-02-12

Review 7.  Expansion and Functional Diversification of TFIIB-Like Factors in Plants.

Authors:  He Ning; Su Yang; Baofang Fan; Cheng Zhu; Zhixiang Chen
Journal:  Int J Mol Sci       Date:  2021-01-23       Impact factor: 5.923

8.  Multiplexed Single-Molecule Experiments Reveal Nucleosome Invasion Dynamics of the Cas9 Genome Editor.

Authors:  Kristina Makasheva; Louise C Bryan; Carolin Anders; Sherin Panikulam; Martin Jinek; Beat Fierz
Journal:  J Am Chem Soc       Date:  2021-10-01       Impact factor: 15.419

Review 9.  ICP22/IE63 Mediated Transcriptional Regulation and Immune Evasion: Two Important Survival Strategies for Alphaherpesviruses.

Authors:  Qing He; Ying Wu; Mingshu Wang; Shun Chen; Renyong Jia; Qiao Yang; Dekang Zhu; Mafeng Liu; Xinxin Zhao; Shaqiu Zhang; Juan Huang; Xumin Ou; Sai Mao; Qun Gao; Di Sun; Bin Tian; Anchun Cheng
Journal:  Front Immunol       Date:  2021-12-02       Impact factor: 7.561

10.  Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant.

Authors:  Seiya Hirai; Kosuke Tomimatsu; Atsuko Miyawaki-Kuwakado; Yoshimasa Takizawa; Tetsuro Komatsu; Taro Tachibana; Yutaro Fukushima; Yasuko Takeda; Lumi Negishi; Tomoya Kujirai; Masako Koyama; Yasuyuki Ohkawa; Hitoshi Kurumizaka
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

  10 in total

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