Literature DB >> 31471301

Public Microbial Resource Centers: Key Hubs for Findable, Accessible, Interoperable, and Reusable (FAIR) Microorganisms and Genetic Materials.

P Becker1, M Bosschaerts2, P Chaerle3, H-M Daniel4, A Hellemans5, A Olbrechts6, L Rigouts7, A Wilmotte8, M Hendrickx9.   

Abstract

In the context of open science, the availability of research materials is essential for knowledge accumulation and to maximize the impact of scientific research. In microbiology, microbial domain biological resource centers (mBRCs) have long-standing experience in preserving and distributing authenticated microbial strains and genetic materials (e.g., recombinant plasmids and DNA libraries) to support new discoveries and follow-on studies. These culture collections play a central role in the conservation of microbial biodiversity and have expertise in cultivation, characterization, and taxonomy of microorganisms. Information associated with preserved biological resources is recorded in databases and is accessible through online catalogues. Legal expertise developed by mBRCs guarantees end users the traceability and legality of the acquired material, notably with respect to the Nagoya Protocol. However, awareness of the advantages of depositing biological materials in professional repositories remains low, and the necessity of securing strains and genetic resources for future research must be emphasized. This review describes the unique position of mBRCs in microbiology and molecular biology through their history, evolving roles, expertise, services, challenges, and international collaborations. It also calls for an increased deposit of strains and genetic resources, a responsibility shared by scientists, funding agencies, and publishers. Journal policies requesting a deposit during submission of a manuscript represent one of the measures to make more biological materials available to the broader community, hence fully releasing their potential and improving openness and reproducibility in scientific research.
Copyright © 2019 American Society for Microbiology.

Entities:  

Keywords:  FAIR; Nagoya Protocol; culture collection; mBRC; open access

Year:  2019        PMID: 31471301      PMCID: PMC6803313          DOI: 10.1128/AEM.01444-19

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  54 in total

1.  The role of public biological resource centers in providing a basic infrastructure for microbial research.

Authors:  Danielle Janssens; David R Arahal; Chantal Bizet; Esperanza Garay
Journal:  Res Microbiol       Date:  2010-04-28       Impact factor: 3.992

Review 2.  The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections.

Authors:  Kyria Boundy-Mills; Matthias Hess; A Rick Bennett; Matthew Ryan; Seogchan Kang; David Nobles; Jonathan A Eisen; Patrik Inderbitzin; Irnayuli R Sitepu; Tamas Torok; Daniel R Brown; Juliana Cho; John E Wertz; Supratim Mukherjee; Sherry L Cady; Kevin McCluskey
Journal:  Appl Environ Microbiol       Date:  2015-06-19       Impact factor: 4.792

Review 3.  Microbiological Research Under the Nagoya Protocol: Facts and Fiction.

Authors:  Jörg Overmann; Amber Hartman Scholz
Journal:  Trends Microbiol       Date:  2016-11-22       Impact factor: 17.079

Review 4.  The multi-omics promise in context: from sequence to microbial isolate.

Authors:  Johanna Gutleben; Maryam Chaib De Mares; Jan Dirk van Elsas; Hauke Smidt; Jörg Overmann; Detmer Sipkema
Journal:  Crit Rev Microbiol       Date:  2017-05-31       Impact factor: 7.624

5.  Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains.

Authors:  Jens Klockgether; Antje Munder; Jens Neugebauer; Colin F Davenport; Frauke Stanke; Karen D Larbig; Stephan Heeb; Ulrike Schöck; Thomas M Pohl; Lutz Wiehlmann; Burkhard Tümmler
Journal:  J Bacteriol       Date:  2009-12-18       Impact factor: 3.490

6.  Historical distribution and molecular diversity of Bacillus anthracis, Kazakhstan.

Authors:  Alim M Aikembayev; Larissa Lukhnova; Gulnara Temiraliyeva; Tatyana Meka-Mechenko; Yerlan Pazylov; Sarkis Zakaryan; Georgiy Denissov; W Ryan Easterday; Matthew N Van Ert; Paul Keim; Stephen C Francesconi; Jason K Blackburn; Martin Hugh-Jones; Ted Hadfield
Journal:  Emerg Infect Dis       Date:  2010-05       Impact factor: 6.883

Review 7.  Yeast culture collections in the twenty-first century: new opportunities and challenges.

Authors:  Kyria L Boundy-Mills; Ewald Glantschnig; Ian N Roberts; Andrey Yurkov; Serge Casaregola; Heide-Marie Daniel; Marizeth Groenewald; Benedetta Turchetti
Journal:  Yeast       Date:  2016-06-17       Impact factor: 3.239

8.  Improving interoperability between microbial information and sequence databases.

Authors:  Paolo Romano; Peter Dawyndt; Francesca Piersigilli; Jean Swings
Journal:  BMC Bioinformatics       Date:  2005-12-01       Impact factor: 3.169

Review 9.  An Information System for European culture collections: the way forward.

Authors:  Serge Casaregola; Alexander Vasilenko; Paolo Romano; Vincent Robert; Svetlana Ozerskaya; Anna Kopf; Frank O Glöckner; David Smith
Journal:  Springerplus       Date:  2016-06-17

Review 10.  A Review of Living Collections with Special Emphasis on Sustainability and Its Impact on Research Across Multiple Disciplines.

Authors:  Kevin McCluskey
Journal:  Biopreserv Biobank       Date:  2016-11-21       Impact factor: 2.300

View more
  4 in total

Review 1.  NCBI Taxonomy: a comprehensive update on curation, resources and tools.

Authors:  Conrad L Schoch; Stacy Ciufo; Mikhail Domrachev; Carol L Hotton; Sivakumar Kannan; Rogneda Khovanskaya; Detlef Leipe; Richard Mcveigh; Kathleen O'Neill; Barbara Robbertse; Shobha Sharma; Vladimir Soussov; John P Sullivan; Lu Sun; Seán Turner; Ilene Karsch-Mizrachi
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

Review 2.  Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes.

Authors:  Lotus A Lofgren; Jason E Stajich
Journal:  Curr Biol       Date:  2021-10-11       Impact factor: 10.900

Review 3.  Preservation, Characterization and Exploitation of Microbial Biodiversity: The Perspective of the Italian Network of Culture Collections.

Authors:  Luciana De Vero; Maria Beatrice Boniotti; Marilena Budroni; Pietro Buzzini; Stefano Cassanelli; Roberta Comunian; Maria Gullo; Antonio F Logrieco; Ilaria Mannazzu; Rosario Musumeci; Iolanda Perugini; Giancarlo Perrone; Andrea Pulvirenti; Paolo Romano; Benedetta Turchetti; Giovanna Cristina Varese
Journal:  Microorganisms       Date:  2019-12-12

Review 4.  Preserving US microbe collections sparks future discoveries.

Authors:  K Boundy-Mills; K McCluskey; P Elia; J A Glaeser; D L Lindner; D R Nobles; J Normanly; F M Ochoa-Corona; J A Scott; T J Ward; K M Webb; K Webster; J E Wertz
Journal:  J Appl Microbiol       Date:  2019-12-12       Impact factor: 3.772

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.