| Literature DB >> 31463388 |
Engy Mohamed El-Ghitany1, Azza Galal Farghaly1.
Abstract
BACKGROUND: Geographic Information Systems (GIS) and spatial epidemiological methods may provide a basis for disease investigation through which hotspots and disease determinants can be identified. Applying these methods for hepatitis C virus (HCV) in Egypt would support a more effective strategy to control its transmission. Therefore, this study used GIS software to draw one of the first HCV maps in Egypt elucidating and analyzing geographical and epidemiological differences in HCV distribution within the country.Entities:
Keywords: Microbiology; Virology
Year: 2019 PMID: 31463388 PMCID: PMC6709406 DOI: 10.1016/j.heliyon.2019.e02249
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
HCV prevalence and quantitation of viremia by governorate in Egypt, 2016/2017.
| Governorate | Total no | Anti-HCV | Antibody prevalence % | Number of PCR positive | Mean (x10ˆ6) | SD | Chronic HCV prevalence % | Persistent infection among seropositive (%) | |
|---|---|---|---|---|---|---|---|---|---|
| Alexandria | 2349 | 2205 | 144 | 6.1 | 100 | 4.36 | 2.97 | 4.3 | 69.4 |
| Asyut | 217 | 171 | 46 | 21.2 | 33 | 4.18 | 2.50 | 15.2 | 71.7 |
| Beheira | 935 | 781 | 154 | 16.5 | 82 | 3.84 | 2.37 | 8.8 | 53.2 |
| Beni suef | 260 | 184 | 76 | 29.2 | 24 | 3.76 | 2.44 | 9.2 | 31.6 |
| Cairo | 328 | 294 | 34 | 10.4 | 9 | 4.74 | 2.78 | 6.9 | 50.0 |
| Dakahlia | 274 | 228 | 46 | 16.8 | |||||
| Damietta | 146 | 115 | 31 | 21.2 | 20 | 3.96 | 2.12 | 13.7 | 64.5 |
| Faiyum | 291 | 235 | 56 | 19.2 | 41 | 4.14 | 2.55 | 14.1 | 73.2 |
| Gharbia | 440 | 334 | 106 | 24.1 | |||||
| Giza | 336 | 297 | 39 | 11.6 | 24 | 4.89 | 2.97 | 7.1 | 61.5 |
| Ismailia | 119 | 93 | 26 | 21.8 | 13 | 3.76 | 2.20 | 10.9 | 50.0 |
| Kafr El-Sheikh | 2750 | 2435 | 315 | 11.5 | 232 | 3.95 | 2.57 | 8.4 | 73.7 |
| Luxor | 1052 | 948 | 104 | 9.9 | 72 | 3.78 | 2.88 | 6.8 | 69.2 |
| Marsa matruh | 374 | 319 | 55 | 14.7 | 37 | 2.69 | 1.82 | 9.9 | 67.3 |
| Menoufeya | 362 | 225 | 137 | 37.8 | 98 | 3.66 | 2.43 | 27.1 | 71.5 |
| Minya | 469 | 335 | 134 | 28.6 | 94 | 3.67 | 2.94 | 20.0 | 70.1 |
| Port Said | 71 | 67 | 4 | 5.6 | 2 | 2.59 | 0.80 | 2.8 | 50.0 |
| Qalubeya | 363 | 283 | 80 | 22.0 | 68 | 3.67 | 2.35 | 18.7 | 85.0 |
| Sharqeya | 371 | 275 | 96 | 25.9 | 50 | 3.71 | 2.13 | 13.5 | 52.1 |
| Sohag | 443 | 364 | 79 | 17.8 | 51 | 4.04 | 2.54 | 11.5 | 64.6 |
| Suez | 219 | 186 | 33 | 15.1 | 20 | 3.92 | 2.29 | 9.1 | 60.6 |
| Total | 12169 | 10374 | 1795 | 14.8 | 1070 | 3.88 | 2.57 | 9.5 | 65.8 |
The total number of anti-HCV positive were 1795, but only 1627 underwent PCR. The remaining 168 were 16 in Cairo, 106 of Gharbia and 46 of Dakahlia.
In Cairo, the chronic infection rate was calculated from the 130 individuals whose blood has been tested for viremia when anti-HCV was positive.
The total chronic HCV prevalence was calculated from a total of 11257 after exclusion of Dakahlia and Gharbia populations and 198 individuals in Cairo who did not undergo PCR testing when anti-HCV tests were positive.
The total persistent infection prevalence was calculated from a total of 1625 anti-HCV positive cases in whom PCR testing was done.
Fig. 1Prevalence of anti-HCV across 21 Egyptian governorates in 2016/2017.
HCV prevalence and quantitation by age groups in 2016/2017.
| Rate Age group | Total sample size | PCR sample size | Anti-HCV negative (no) | Anti-HCV positive (no) | PCR analysis (no) | Anti-HCV prevalence (%) | Positive PCR (no) | Chronic HCV prevalence (%) | Persistent infection |
|---|---|---|---|---|---|---|---|---|---|
| 14–19 | 782 | 733 | 773 | 9 | 9 | 1.15 | 6 | 0.82 | 66.67 |
| 20–24 | 1075 | 1010 | 1049 | 26 | 24 | 2.42 | 14 | 1.39 | 58.33 |
| 25–29 | 1434 | 1333 | 1365 | 69 | 60 | 4.81 | 37 | 2.78 | 61.67 |
| 30–34 | 1663 | 1553 | 1574 | 89 | 81 | 5.35 | 59 | 3.80 | 72.84 |
| 35–39 | 1546 | 1411 | 1401 | 145 | 138 | 9.38 | 97 | 6.87 | 70.29 |
| 40–44 | 1458 | 1346 | 1262 | 196 | 178 | 13.44 | 99 | 7.36 | 55.62 |
| 45–49 | 1171 | 1084 | 908 | 263 | 236 | 22.46 | 162 | 14.94 | 68.64 |
| 50–54 | 1136 | 1054 | 824 | 312 | 280 | 27.46 | 193 | 18.31 | 68.93 |
| 55–59 | 808 | 742 | 538 | 270 | 245 | 33.42 | 162 | 21.83 | 66.12 |
| 60–64 | 733 | 651 | 420 | 313 | 281 | 42.70 | 173 | 26.57 | 61.57 |
| 65–69 | 207 | 189 | 141 | 66 | 58 | 31.88 | 45 | 23.81 | 77.59 |
| 70–90 | 155 | 151 | 118 | 37 | 35 | 23.87 | 23 | 15.23 | 65.71 |
The number of population whose sera were tested for viremia when anti-HCV results were positive. This sample size was used as denominator when chronic HCV prevalence was calculated.
The number of anti-HCV positive population who were tested for viremia by PCR. This number was used as denominator for calculating the rate of persistent infection.
Fig. 2Anti-HCV prevalence by age in the current study and EHIS, 2015.
Burden of chronic HCV population in Egyptian governorates in 2016/2017.
| Governorate | Chronic HCV % | Population in 2015 No. | Estimated chronic HCV No. | Contribution to the total chronic HCV % |
|---|---|---|---|---|
| Alexandria | 4.3 | 4812186 | 206924 | 2.4 |
| Asyut | 15.2 | 4245215 | 645273 | 7.6 |
| Beheira | 8.8 | 5804262 | 510775 | 6.0 |
| Beni suef | 9.2 | 2856812 | 262827 | 3.1 |
| Cairo | 6.9 | 9278441 | 640212 | 7.5 |
| Damietta | 13.7 | 1330843 | 182326 | 2.1 |
| Faiyum | 14.1 | 3170150 | 446991 | 5.3 |
| Giza | 7.1 | 7585115 | 538543 | 6.3 |
| Ismailia | 10.9 | 1178641 | 128472 | 1.5 |
| Kafr El-Sheikh | 8.4 | 3172753 | 266511 | 3.1 |
| Luxor | 6.8 | 1147058 | 78000 | 0.9 |
| Marsa matruh | 9.9 | 447846 | 44337 | 0.5 |
| Menoufeya | 27.1 | 3941293 | 1068090 | 12.6 |
| Minya | 20.0 | 5156702 | 1031340 | 12.2 |
| Port Said | 2.8 | 666599 | 18665 | 0.2 |
| Qalubeya | 18.7 | 5105972 | 954817 | 11.3 |
| Sharqeya | 13.5 | 6485412 | 875531 | 10.3 |
| Sohag | 11.5 | 4603861 | 529444 | 6.2 |
| Suez | 9.1 | 622859 | 56680 | 0.7 |
| Total | 14.8 | |||
Independent HCV risk factors in Egyptian governorates in 2016.
| Risk Factor | Governorate | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Alexandria | Asyut | Beheira | Beni suef | Cairo | Dakahlia | Damietta | Faiyum | Gharbia | Giza | Ismailia | Kafr El-Sheikh | Luxor | Marsa matruh | Menoufeya | Minya | Port Said | Qalubeya | Sharqeya | Sohag | Suez | |||
| Age | OR | 1.04 | 1.07 | 1.08 | 1.11 | 1.09 | 1.19 | 1.09 | 1.11 | 1.15 | 1.04 | 1.10 | 1.15 | 1.04 | 1.10 | 1.09 | 1.10 | 1.09 | 1.08 | ||||
| 95% CI | U | 1.01 | 1.00 | 1.05 | 1.10 | 1.01 | 1.03 | 1.05 | 1.02 | 1.07 | 1.02 | 1.07 | 1.07 | 1.00 | 1.03 | 1.04 | 1.05 | 1.04 | 1.04 | ||||
| L | 1.06 | 1.13 | 1.10 | 1.17 | 1.18 | 1.37 | 1.12 | 1.13 | 1.23 | 1.05 | 1.13 | 1.23 | 1.08 | 1.11 | 1.15 | 1.16 | 1.14 | 1.12 | |||||
| Female gender | OR | 0.06 | 0.29 | 0.15 | |||||||||||||||||||
| 95% CI | U | 0.01 | 0.10 | 0.03 | |||||||||||||||||||
| L | 0.62 | 0.93 | 0.80 | ||||||||||||||||||||
| Rural residence | OR | 3.16 | 2.90 | 0.24 | 2.10 | 2.24 | |||||||||||||||||
| 95% CI | U | 1.34 | 1.18 | 0.09 | 1.03 | 1.01 | |||||||||||||||||
| L | 7.45 | 7.15 | 0.70 | 4.10 | 4.96 | ||||||||||||||||||
| Low educational level | OR | 0.85 | |||||||||||||||||||||
| 95% CI | U | 0.72 | |||||||||||||||||||||
| L | 0.99 | ||||||||||||||||||||||
| Occupation | OR | 0.30 | |||||||||||||||||||||
| 95% CI | U | 0.10 | |||||||||||||||||||||
| L | 0.85 | ||||||||||||||||||||||
| Ear or body puncture | OR | 0.40 | |||||||||||||||||||||
| 95% CI | U | 0.18 | |||||||||||||||||||||
| L | 0.88 | ||||||||||||||||||||||
| Blood (products) transfusion | OR | 2.8 | 3.66 | 1.74 | |||||||||||||||||||
| 95% CI | U | 1.54 | 1.54 | 1.14 | |||||||||||||||||||
| L | 5.1 | 8.72 | 2.66 | ||||||||||||||||||||
| Animal bite | OR | 0.55 | |||||||||||||||||||||
| 95% CI | U | 0.38 | |||||||||||||||||||||
| L | 0.78 | ||||||||||||||||||||||
| Contaminated needle prick | OR | 8.26 | 4.29 | ||||||||||||||||||||
| 95% CI | U | 1.93 | 1.32 | ||||||||||||||||||||
| L | 35.29 | 13.88 | |||||||||||||||||||||
| Schistosomiasis | OR | 2.33 | 2.44 | ||||||||||||||||||||
| 95% CI | U | 1.35 | 1.27 | ||||||||||||||||||||
| L | 3.99 | 4.66 | |||||||||||||||||||||
| PAT | OR | 6.4 | 3.43 | 3.13 | 61.57 | 2.34 | 3.05 | 5.14 | |||||||||||||||
| 95% CI | U | 3.47 | 2.14 | 1.00 | 2.50 | 1.72 | 1.63 | 1.41 | |||||||||||||||
| L | 11.66 | 5.50 | 9.80 | 1515.66 | 3.18 | 5.72 | 18.77 | ||||||||||||||||
| Non-invasive intervention | OR | ||||||||||||||||||||||
| 95% CI | U | ||||||||||||||||||||||
| L | |||||||||||||||||||||||
| Labor at home | OR | 17.29 | |||||||||||||||||||||
| 95% CI | U | 1.82 | |||||||||||||||||||||
| L | 164.00 | ||||||||||||||||||||||
| Sharing sharp tools | OR | 1,60 | 1.54 | ||||||||||||||||||||
| 95% CI | U | 1.38 | 1.29 | ||||||||||||||||||||
| L | 1.93 | 2.00 | |||||||||||||||||||||
| Sex during menstruation | OR | 65.83 | |||||||||||||||||||||
| 95% CI | U | 1.3 | |||||||||||||||||||||
| L | 3353.46 | ||||||||||||||||||||||
| IDU | 4.69 | ||||||||||||||||||||||
| 95% CI | U | 1.41 | |||||||||||||||||||||
| L | 15.76 | ||||||||||||||||||||||
| Fatigue during last 6 months | OR | 2.58 | |||||||||||||||||||||
| 95% CI | U | 1.08 | |||||||||||||||||||||
| L | 6.13 | ||||||||||||||||||||||
| Jaundice | OR | 6.81 | 5.11 | ||||||||||||||||||||
| 95% CI | U | 2.30 | 1.25 | ||||||||||||||||||||
| L | 20.15 | 20.9 | |||||||||||||||||||||