| Literature DB >> 31457902 |
Karl N Kirschner1, Wolfgang Heiden1, Dirk Reith1.
Abstract
The elucidation of conformations and relative potential energies (rPEs) of small molecules has a long history across a diverse range of fields. Periodically, it is helpful to revisit what conformations have been investigated and to provide a consistent theoretical framework for which clear comparisons can be made. In this paper, we compute the minima, first- and second-order saddle points, and torsion-coupled surfaces for methanol, ethanol, propan-2-ol, and propanol using consistent high-level MP2 and CCSD(T) methods. While for certain molecules more rigorous methods were employed, the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pV5Z theory level was used throughout to provide relative energies of all minima and first-order saddle points. The rPE surfaces were uniformly computed at the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ level. To the best of our knowledge, this represents the most extensive study for alcohols of this kind, revealing some new aspects. Especially for propanol, we report several new conformations that were previously not investigated. Moreover, two metrics are included in our analysis that quantify how the selected surfaces are similar to one another and hence improve our understanding of the relationship between these alcohols.Entities:
Year: 2018 PMID: 31457902 PMCID: PMC6641652 DOI: 10.1021/acsomega.7b01367
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1MP2/aV5Z fully optimized structures and conformational nomenclature (see Methodology) for propan-2-ol’s minima and first-order saddle points. The black labels are for the structures shown, whereas the isomer labels are given in blue.
Figure 2MP2/aV5Z fully optimized structures and nomenclature for propanol’s minima and first-order saddle points. See Figure for the explanation of the labels’ colors.
Rotational Constants (cm–1) Computed Using MP2/aVTZ and Coupled Cluster Geometries, with Average Experimental Values Also Provideda
| methanol | MP2/aVTZ | CCSD(T)/aVQZ | experimental average |
|---|---|---|---|
| A | 4.290 (+0.033) | 4.305 (+0.048) | 4.25732 |
| B | 0.826 (+0.002) | 0.831 (+0.007) | 0.82351 |
| C | 0.797 (+0.004) | 0.802 (+0.009) | 0.79260 |
The error of the theoretical to experimental values are given in parentheses. The average percent error is also provided as a summary statistic.
All coupled cluster calculations were performed with full electron correlations, whose values were obtained from ref (5). These calculations represent the most rigorous theory that rotational constants were determined in the literature.
References (6) and (7).
References (8) and (9).
References (10−12).
References (13) and (14).
Average All-Atom RMSD (Å) Computed Using All Minima and First-Order Saddle Points Investigated, Whose Geometries Were Fully Optimized at the Indicated Theory Levelsa
| over all molecules | |||||||
|---|---|---|---|---|---|---|---|
| methanol | ethanol | propan-2-ol | propanol | max. | min. | average | |
| HF/6-31G(d) | 0.009 | 0.013 | 0.019 | 0.022 | 0.040 | 0.008 | 0.019 |
| MP2/VTZ | 0.005 | 0.004 | 0.005 | 0.006 | 0.015 | 0.003 | 0.005 |
| MP2/aVTZ | 0.003 | 0.003 | 0.004 | 0.004 | 0.004 | 0.003 | 0.004 |
| MP2/VQZ | 0.002 | 0.002 | 0.001 | 0.002 | 0.004 | 0.001 | 0.002 |
| MP2/aVQZ | 0.001 | 0.001 | 0.001 | 0.001 | 0.001 | 0.001 | 0.001 |
| # of conformations | 2 | 6 | 7 | 20 | 35 | ||
The MP2/aV5Z geometries were used as reference structures. The overall maximum, minimum, and average RMSD for each theory level are also given.
Cis First-Order Saddle Point (C) rPE Barrier for the HCOH Torsion Rotation in Methanol, Relative to the Global Trans (C) Minimuma
| geometry: HF/6-31G(d) | geometry: MP2/VTZ | geometry: MP2/aVTZ | geometry: MP2/VQZ | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| conf. | sym. | HF/6-31G(d) | MP2.5/VTZ | MP2.5/aVTZ | MP2/VTZ | MP2.5/VTZ | MP2.5/aVTZ | MP2/aVTZ | MP2.5/aVTZ | MP2/VQZ | MP2.5/VQZ |
| t | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
| c (‡: HCOH) | 1.359 (0.338) | 1.115 (0.094) | 0.985 (−0.036) | 1.131 (0.110) | 1.110 (0.089) | 0.983 (−0.038) | 0.995 (−0.026) | 0.985 (−0.036) | 1.053 (0.032) | 1.039 (0.018) | |
Errors with respect to the CCSD(T)/CBS[aVTZ, aVQZ]//MP2/aV5Z values are given in parentheses.
Reference (17). The aVTZ basis set was modified by removing the highest spin functions.
All electrons were correlated, ref (18).
Reference (19).
Reference (20).
The rPE for the Fully Optimized Minima and First-Order Saddle Points for the Rotation about CCCO and CCOH Torsion Angles in Propanol (See Figure ), as Computed at Several Different Theory Levelsa
| geometry: MP2/aVTZ | geometry: MP2/aV5Z | previous
calculations | |||||||
|---|---|---|---|---|---|---|---|---|---|
| conformation | sym. | MP2/aVTZ | MP2/aV5Z | MP2.5/VTZ | MP2.5/aVTZ | CCSD(T)/aVTZ | MP2/aVTZ | FP | CCSD(T)/aVTZ |
| Cg+, Cg– (‡: CCCO) | 5.406 (0.402) | 5.425 (0.421) | 5.044 (0.040) | 5.240 (0.236) | 5.004 | 4.98 | |||
| Ct (‡: CCCO) | 5.285 (0.251) | 5.288 (0.254) | 5.219 (0.185) | 5.199 (0.165) | 5.034 | 5.11 | |||
| G+c, G–c (‡: CCOH) | 1.706 (0.150) | 1.705 (0.149) | 1.659 (0.103) | 1.623 (0.067) | 1.556 | 1.53 | |||
| G+g+, G–g– | 0.245 (0.122) | 0.253 (0.130) | 0.004 (−0.119) | 0.182 (0.059) | 0.123 | 0.20 | 0.15 | 0.132 | |
| G+g+, G–g– (‡: −CH3) | 2.947 (0.222) | 2.954 (0.229) | 2.804 (0.079) | 2.851 (0.126) | 2.725 | ||||
| G+ e+, G–e– (‡: CCOH) | 1.029 (0.066) | 1.048 (0.085) | 1.077 (0.114) | 1.009 (0.046) | 0.963 | 0.96 | |||
| G+t, G–t | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.00 | 0.00 | 0.000 | |
| G+t, G–t (‡: −CH3) | 2.811 (0.117) | 2.817 (0.123) | 2.862 (0.168) | 2.772 (0.078) | 2.694 | ||||
| G+e–, G–e+ (‡: CCOH) | 0.932 (0.102) | 0.961 (0.131) | 0.829 (−0.001) | 0.887 (0.057) | 0.830 | 0.82 | |||
| G+g–, G–g+ | 0.254 (0.134) | 0.257 (0.137) | 0.141 (0.021) | 0.196 (0.076) | 0.120 | 0.23 | 0.11 | 0.126 | |
| G+g–, G–g+ (‡: −CH3) | 3.135 (0.246) | 3.119 (0.230) | 3.048 (0.159) | 3.035 (0.146) | 2.889 | ||||
| E+g+, E–g– (‡: CCCO) | 3.986 (0.303) | 3.995 (0.312) | 3.967 (0.284) | 3.828 (0.145) | 3.683 | 3.52 | |||
| E+t, E–t (‡: CCCO) | 3.562 (0.209) | 3.553 (0.200) | 3.710 (0.357) | 3.453 (0.100) | 3.353 | 3.35 | |||
| E+g–, E–g+ (‡: CCCO) | 4.133 (0.327) | 4.135 (0.329) | 4.096 (0.290) | 3.959 (0.153) | 3.806 | 3.72 | |||
| Tc (‡: CCOH) | 1.341 (0.130) | 1.335 (0.124) | 1.385 (0.174) | 1.227 (0.016) | 1.211 | 1.08 | |||
| Tg+, Tg– | 0.257 (0.130) | 0.255 (0.128) | 0.146 (0.019) | 0.147 (0.020) | 0.127 | 0.22 | 0.13 | 0.128 | |
| Tg+, Tg– (‡: −CH3) | 2.962 (0.238) | 2.942 (0.218) | 2.856 (0.132) | 2.814 (0.091) | 2.724 | ||||
| Te+, Te– (‡: CCOH) | 1.189 (0.124) | 1.203 (0.138) | 1.249 (0.184) | 1.084 (0.019) | 1.065 | 0.95 | |||
| Tt | 0.173 (0.054) | 0.165 (0.046) | 0.211 (0.092) | 0.093 (−0.026) | 0.119 | 0.17 | 0.13 | 0.166 | |
| Tt (‡: −CH3) | 2.904 (0.166) | 2.882 (0.144) | 2.963 (0.225) | 2.785 (0.047) | 2.738 | ||||
Errors with respect to the CCSD(T)/aVTZ//MP2/aV5Z values are given in parentheses.
Reference (27)—computed using MP2/aVDZ full optimized geometries.
Reference (28).
Reference (29).
Average Absolute Error in the rPE with Respect to CCSD(T) Values for the Alcohols Investigated Herein and Four Hydrocarbons Reported in Ref (30)
| molecule | number of
conformations | MP2/aVTZ | MP2/aV5Z | MP2.5/VTZ | MP2.5/aVTZ | target rPE |
|---|---|---|---|---|---|---|
| methanol | 1 | 0.026 | 0.005 | 0.091 | 0.036 | CCSD(T)/CBS[aVTZ,aVQZ] |
| ethanol | 5 | 0.131 | 0.120 | 0.071 | 0.012 | CCSD(T)/aVQZ |
| propan-2-ol | 6 | 0.137 | 0.151 | 0.119 | 0.071 | CCSD(T)/aVTZ |
| propanol | 19 | 0.184 | 0.186 | 0.145 | 0.088 | CCSD(T)/aVTZ |
| butane | 1 | 0.069 | 0.018 | CCSD(T)/aVTZ | ||
| pentane | 3 | 0.145 | 0.028 | CCSD(T)/aVTZ | ||
| hexane | 11 | 0.183 | 0.012 | CCSD(T)/VTZ | ||
| octane | 3 | 0.175 | 0.057 | CCSD(T)/aVTZ |
The difference in the rPE between the theories for each of the molecule’s global minimum was not included in the analysis because it has a value of 0.000 kcal·mol–1 in all cases.
Geometries were fully optimized at the MP2/aVTZ theory level.
Geometries were fully optimized using at the MP2/aV5Z theory level.
Reference (31). Geometries were optimized at the MP2/VTZ theory level.
Figure 3The rPE surface for the rotation of ethanol’s HCCO and CCOH torsion angles computed at the CCSD(T)/aVTZ//MP2/aVTZ theory level. The relative energy scale is shown in 0.25 kcal·mol–1 bins. The corresponding relative energy values are given in Supporting Information Table 7.
Figure 5CCSD(T)/aVTZ//MP2/aVTZ rPE surface for the rotational coupling of propanol’s terminal methyl group with the CCOH (a,b) and CCCO (c,d) torsion angles. The relative energy scale is shown in 0.25 kcal·mol–1 bins, which ranges from the global minimum to the global maximum for all propanol surfaces computed. The CCSD(T) energies are given in Supporting Information Tables 10–13.
Average CCSD(T)/aVTZ rPE of Each Surface Determined by the Coupling of the Terminal Methyl (i.e., HCCx, x = C,O) and Hydroxyl (i.e. CCOH) Rotations within Ethanol, Propan-2-ol, (+/−)-Gauche Propanol, and Trans Propanol, as well as Their Differencesa
| difference | |||||
|---|---|---|---|---|---|
| average rPE | ethanol | propan-2-ol | (+/−)-gauche propanol | trans propanol | |
| ethanol | 2.262 | 0.000 | |||
| propan-2-ol | 2.309 | 0.047 | 0.000 | ||
| (+/−)-gauche propanol | 1.913 | –0.349 | –0.396 | 0.000 | |
| trans
propanol | 1.889 | –0.373 | –0.420 | –0.024 | 0.000 |
The similarity index computed between each surface is also provided.
The data used are plotted in Figure and given in Supporting Information Table 7.
The data used are plotted in Supporting Information Figure 1 and in Supporting Information Table 8.
The data used are plotted in Figure b and given in Supporting Information Table 11.
The data used are plotted in Figure a and given in Supporting Information Table 10.
The rPE for the Fully Optimized Minima and First-Order Saddle Points for the Rotation about HCCO and CCOH Torsion Angles in Ethanol (See Figure ), as Computed at Several Different Theory Levelsa
| geometry: MP2/VTZ | geometry: MP2/aVTZ | geometry: MP2/VQZ | geometry: MP2/aVQZ | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| conformation | symmetry | MP2/VTZ | MP2.5/VTZ | MP2.5/aVTZ | MP2/aVTZ | MP2.5/aVTZ | MP2/VQZ | MP2.5/VQZ | MP2/aVQZ | MP2.5/aVQZ |
| t | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | |
| e+, e– (‡: CCOH) | 1.191 (0.096) | 1.154 (0.059) | 1.104 (0.009) | 1.144 (0.049) | 1.108 (0.013) | 1.183 (0.088) | 1.147 (0.052) | 1.170 (0.075) | 1.136 (0.041) | |
| g+, g– | 0.067 (−0.061) | 0.038 (−0.090) | 0.163 (0.035) | 0.216 (0.088) | 0.165 (0.037) | 0.174 (0.046) | 0.131 (0.003) | 0.219 (0.091) | 0.168 (0.040) | |
| c (‡: CCOH) | 1.303 (0.094) | 1.256 (0.047) | 1.247 (0.038) | 1.304 (0.095) | 1.247 (0.038) | 1.297 (0.088) | 1.244 (0.035) | 1.299 (0.090) | 1.244 (0.035) | |
| t (‡: −CH3) | 3.428 (0.314) | 3.368 (0.254) | 3.237 (0.123) | 3.288 (0.174) | 3.236 (0.122) | 3.316 (0.202) | 3.263 (0.149) | 3.255 (0.141) | 3.209 (0.095) | |
| g+, g– (‡: −CH3) | 3.776 (0.248) | 3.677 (0.149) | 3.676 (0.148) | 3.794 (0.266) | 3.678 (0.150) | 3.776 (0.248) | 3.668 (0.140) | 3.779 (0.251) | 3.668 (0.140) | |
Errors with respect to the CCSD(T)/aVQZ//MP2/aV5Z values are given in parentheses.
Reference (21). These energies were computed at MP2/aVTZ fully optimized geometries.
Reference (22).
Reference (23).
References (8) and (23).
Estimated by adding the relative minima of the gauche conformation to the gauche–gauche barrier (i.e., 0.124 + 1.087 kcal·mol–1 from Table 1 of ref (21)).
Estimated by adding the experimental relative energy of the gauche conformation to the gauche–gauche barrier (i.e., 0.120 + 1.14 kcal·mol–1 from ref (23)).
References (8) and (23−25).
References (8), (23), and (26).
The rPE for the Fully Optimized Minima and First-Order Transition States for the Rotation about HCCO and CCOH Torsion Angles in Propan-2-ol (See Supporting Information Figure 2), as Computed at Several Different Theory Levelsa
| geometry: MP2/aVTZ | geometry: MP2/aV5Z | previous
work | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| conformation | symmetry | MP2/aVTZ | MP2.5/aVTZ | CCSD(T)/aVTZ | MP2/aV5Z | MP2.5/VTZ | MP2.5/aVTZ | CCSD(T)/aVTZ | MP2/aVTZ | FP |
| g+, g– | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.00 | 0.00 | |
| t | 0.349 (0.092) | 0.284 (0.027) | 0.257 (0.000) | 0.363 (0.106) | 0.186 (−0.071) | 0.283 (0.026) | 0.257 | 0.35 | 0.18, 0.268 | |
| e+, e– (‡: HCOH) | 1.203 (0.061) | 1.167 (0.025) | 1.142 (0.000) | 1.206 (0.064) | 1.246 (0.104) | 1.167 (0.025) | 1.142 | 1.18 | 1.07, 1.143 | |
| c (‡: HCOH) | 1.327 (0.053) | 1.301 (0.027) | 1.273 (−0.001) | 1.351 (0.077) | 1.368 (0.094) | 1.301 (0.027) | 1.274 | 1.33 | 1.24, 1.318 | |
| g+ (‡: −CH3 a), g– (‡: CH3 b) | 3.312 (0.164) | 3.256 (0.108) | 3.148 (0.000) | 3.322 (0.174) | 3.304 (0.156) | 3.255 (0.107) | 3.148 | 3.09, 3.189 | ||
| g– (‡: −CH3 a), g+ (‡: CH3 b) | 3.662 (0.180) | 3.589 (0.107) | 3.482 (0.000) | 3.677 (0.195) | 3.674 (0.192) | 3.588 (0.106) | 3.482 | 3.30 | ||
| t (‡: −CH3 a) | 3.999 (0.271) | 3.862 (0.134) | 3.727 (−0.001) | 4.017 (0.289) | 3.824 (0.096) | 3.861 (0.133) | 3.728 | |||
Errors with respect to the CCSD(T)/aVTZ//MP2/aV5Z values are given in parentheses.
Reference (27). Computed using MP2/aVDZ full optimized geometries.
References (22) and (28).
It is unclear for which methyl rotation the reported values are modeling; thus, the assignments here are an assumption based on the value’s magnitude.
Figure 4The rPE surface for the rotation of propanol’s CCCO and CCOH torsion angles computed at the CCSD(T)/aVTZ//MP2/aVTZ theory level. The rPE scale is shown in 0.25 kcal·mol–1 bins, which ranges from the global minimum to the global maximum for all propanol surfaces computed (see also Figure ). The CCSD(T)/aVTZ energies are given in Supporting Information Table 9.
Nomenclature and Their Abbreviations Based on a Torsion Range (in Degrees)
| abbreviations | |||
|---|---|---|---|
| nomenclature | torsions involving CCCO | torsions involving the hydroxyl’s hydrogen atom | torsion (ϕ) range |
| (+)-gauche | G+ | g+ | 30.0 < ϕ ≤ 90.0 |
| (+)-eclipse | E+ | e+ | 90.0 < ϕ ≤ 150.0 |
| trans | T | t | 150.0 < ϕ ≤ 210.0 |
| (−)-eclipse | E– | e– | 210.0 < ϕ ≤ 270.0 |
| (−)-gauche | G– | g– | 270.0 < ϕ ≤ 330.0 |
| cis | C | c | 330.0 < ϕ ≤ 360.0 and 0.0 ≤ ϕ ≤ 30.0 |