Literature DB >> 31455787

RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis.

Heike Lange1, Simon Y A Ndecky2, Carlos Gomez-Diaz2, David Pflieger2, Nicolas Butel3, Julie Zumsteg2, Lauriane Kuhn4, Christina Piermaria4, Johana Chicher4, Michael Christie5, Ezgi S Karaaslan5, Patricia L M Lang5, Detlef Weigel5, Hervé Vaucheret3, Philippe Hammann4, Dominique Gagliardi6.   

Abstract

The RNA exosome is a key 3'-5' exoribonuclease with an evolutionarily conserved structure and function. Its cytosolic functions require the co-factors SKI7 and the Ski complex. Here we demonstrate by co-purification experiments that the ARM-repeat protein RESURRECTION1 (RST1) and RST1 INTERACTING PROTEIN (RIPR) connect the cytosolic Arabidopsis RNA exosome to the Ski complex. rst1 and ripr mutants accumulate RNA quality control siRNAs (rqc-siRNAs) produced by the post-transcriptional gene silencing (PTGS) machinery when mRNA degradation is compromised. The small RNA populations observed in rst1 and ripr mutants are also detected in mutants lacking the RRP45B/CER7 core exosome subunit. Thus, molecular and genetic evidence supports a physical and functional link between RST1, RIPR and the RNA exosome. Our data reveal the existence of additional cytosolic exosome co-factors besides the known Ski subunits. RST1 is not restricted to plants, as homologues with a similar domain architecture but unknown function exist in animals, including humans.

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Year:  2019        PMID: 31455787      PMCID: PMC6711988          DOI: 10.1038/s41467-019-11807-4

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  78 in total

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Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

2.  Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.

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Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

Review 3.  Cytoplasmic RNA decay pathways - Enzymes and mechanisms.

Authors:  Anna Łabno; Rafał Tomecki; Andrzej Dziembowski
Journal:  Biochim Biophys Acta       Date:  2016-10-03

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Journal:  Nat Plants       Date:  2019-05-10       Impact factor: 15.793

5.  A specialised SKI complex assists the cytoplasmic RNA exosome in the absence of direct association with ribosomes.

Authors:  Elodie Zhang; Varun Khanna; Estelle Dacheux; Abdelkader Namane; Antonia Doyen; Maïté Gomard; Bernard Turcotte; Alain Jacquier; Micheline Fromont-Racine
Journal:  EMBO J       Date:  2019-06-07       Impact factor: 11.598

6.  Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin.

Authors:  Lidia Vasiljeva; Minkyu Kim; Nihal Terzi; Luis M Soares; Stephen Buratowski
Journal:  Mol Cell       Date:  2008-02-15       Impact factor: 17.970

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Journal:  Mol Cell Biol       Date:  2008-06-30       Impact factor: 4.272

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Review 9.  Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.

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Journal:  Genes Dev       Date:  2017-01-15       Impact factor: 11.361

10.  The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.

Authors:  Kian Hématy; Yannick Bellec; Ram Podicheti; Nathalie Bouteiller; Pauline Anne; Céline Morineau; Richard P Haslam; Frederic Beaudoin; Johnathan A Napier; Keithanne Mockaitis; Dominique Gagliardi; Hervé Vaucheret; Heike Lange; Jean-Denis Faure
Journal:  PLoS Genet       Date:  2016-02-01       Impact factor: 5.917

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  19 in total

1.  RST1 Is a FREE1 Suppressor That Negatively Regulates Vacuolar Trafficking in Arabidopsis.

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Journal:  Plant Cell       Date:  2019-06-20       Impact factor: 11.277

2.  Organellar and Secretory Ribonucleases: Major Players in Plant RNA Homeostasis.

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Journal:  Plant Physiol       Date:  2020-06-08       Impact factor: 8.340

3.  Loss of FOCAD, operating via the SKI messenger RNA surveillance pathway, causes a pediatric syndrome with liver cirrhosis.

Authors:  Ricardo Moreno Traspas; Tze Shin Teoh; Pui-Mun Wong; Michael Maier; Crystal Y Chia; Kenneth Lay; Nur Ain Ali; Austin Larson; Fuad Al Mutairi; Nouriya Abbas Al-Sannaa; Eissa Ali Faqeih; Majid Alfadhel; Huma Arshad Cheema; Juliette Dupont; Stéphane Bézieau; Bertrand Isidor; Dorrain Yanwen Low; Yulan Wang; Grace Tan; Poh San Lai; Hugues Piloquet; Madeleine Joubert; Hulya Kayserili; Kimberly A Kripps; Shareef A Nahas; Eric P Wartchow; Mikako Warren; Gandham SriLakshmi Bhavani; Majed Dasouki; Renata Sandoval; Elisa Carvalho; Luiza Ramos; Gilda Porta; Bin Wu; Harsha Prasada Lashkari; Badr AlSaleem; Raeda M BaAbbad; Anabela Natália Abreu Ferrão; Vasiliki Karageorgou; Natalia Ordonez-Herrera; Suliman Khan; Peter Bauer; Benjamin Cogne; Aida M Bertoli-Avella; Marie Vincent; Katta Mohan Girisha; Bruno Reversade
Journal:  Nat Genet       Date:  2022-07-21       Impact factor: 41.307

4.  CER16 Inhibits Post-Transcriptional Gene Silencing of CER3 to Regulate Alkane Biosynthesis.

Authors:  Xianpeng Yang; Tao Feng; Shipeng Li; Huayan Zhao; Shuangshuang Zhao; Changle Ma; Matthew A Jenks; Shiyou Lü
Journal:  Plant Physiol       Date:  2020-01-15       Impact factor: 8.340

5.  The Arabidopsis mTERF-repeat MDA1 protein plays a dual function in transcription and stabilization of specific chloroplast transcripts within the psbE and ndhH operons.

Authors:  Louis-Valentin Méteignier; Rabea Ghandour; Karin Meierhoff; Aude Zimmerman; Johana Chicher; Nicolas Baumberger; Abdelmalek Alioua; Jörg Meurer; Reimo Zoschke; Kamel Hammani
Journal:  New Phytol       Date:  2020-05-26       Impact factor: 10.151

6.  Extracellular-vesicles delivered tumor-specific sequential nanocatalysts can be used for MRI-informed nanocatalytic Therapy of hepatocellular carcinoma.

Authors:  Han Wu; Hao Xing; Meng-Chao Wu; Feng Shen; Yu Chen; Tian Yang
Journal:  Theranostics       Date:  2021-01-01       Impact factor: 11.556

7.  mRNA surveillance complex PELOTA-HBS1 regulates phosphoinositide-dependent protein kinase1 and plant growth.

Authors:  Wei Kong; Shutang Tan; Qing Zhao; De-Li Lin; Zhi-Hong Xu; Jiří Friml; Hong-Wei Xue
Journal:  Plant Physiol       Date:  2021-08-03       Impact factor: 8.005

Review 8.  The Ins and Outs of Autophagic Ribosome Turnover.

Authors:  Zakayo Kazibwe; Ang-Yu Liu; Gustavo C MacIntosh; Diane C Bassham
Journal:  Cells       Date:  2019-12-10       Impact factor: 6.600

9.  Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation.

Authors:  Alex Charles Tuck; Aneliya Rankova; Alaaddin Bulak Arpat; Luz Angelica Liechti; Daniel Hess; Vytautas Iesmantavicius; Violeta Castelo-Szekely; David Gatfield; Marc Bühler
Journal:  Mol Cell       Date:  2020-02-10       Impact factor: 17.970

10.  Characterization of a DCL2-Insensitive Tomato Bushy Stunt Virus Isolate Infecting Arabidopsis thaliana.

Authors:  Marco Incarbone; Hélene Scheer; Jean-Michel Hily; Lauriane Kuhn; Mathieu Erhardt; Patrice Dunoyer; Denise Altenbach; Christophe Ritzenthaler
Journal:  Viruses       Date:  2020-10-02       Impact factor: 5.048

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