Literature DB >> 11035800

Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli.

B K Mohanty1, S R Kushner.   

Abstract

In vitro, polynucleotide phosphorylase of Escherichia coli can both synthesize RNA by using nucleotide diphosphates as precursors and exonucleolytically degrade RNA in the presence of inorganic phosphate. However, because of the high in vivo concentration of inorganic phosphate in exponentially growing cells, it has been assumed that the enzyme works exclusively as an exonuclease. Here we demonstrate that, contrary to this prediction, polynucleotide phosphorylase not only synthesizes long, highly heteropolymeric tails in vivo, but also accounts for all of the observed residual polyadenylylation in poly(A) polymerase I deficient strains. In addition, the enzyme is responsible for adding the C and U residues that are found in poly(A) tails in exponentially growing cultures of wild type E. coli.

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Year:  2000        PMID: 11035800      PMCID: PMC17278          DOI: 10.1073/pnas.220295997

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism.

Authors:  B K Mohanty; S R Kushner
Journal:  Mol Microbiol       Date:  1999-12       Impact factor: 3.501

2.  Kinetic mechanism of tRNA nucleotidyltransferase from Escherichia coli.

Authors:  K R Williams; P Schofield
Journal:  J Biol Chem       Date:  1977-08-10       Impact factor: 5.157

3.  Polyadenylation promotes degradation of 3'-structured RNA by the Escherichia coli mRNA degradosome in vitro.

Authors:  E Blum; A J Carpousis; C F Higgins
Journal:  J Biol Chem       Date:  1999-02-12       Impact factor: 5.157

4.  Purification and characterization of polynucleotide phosphorylase from Escherichia coli. Probe for the analysis of 3' sequences of RNA.

Authors:  H Soreq; U Z Littauer
Journal:  J Biol Chem       Date:  1977-10-10       Impact factor: 5.157

5.  Study of the Escherichia coli tRNA nucleotidyltransferase. Interactions of the enzyme with tRNA.

Authors:  D S Carre; S Litvak; F Chapeville
Journal:  Biochim Biophys Acta       Date:  1974-08-29

6.  Purification and characterization of adenosine triphosphate: ribonucleic acid adenyltransferase from Escherichia coli.

Authors:  A E Sippel
Journal:  Eur J Biochem       Date:  1973-08-01

7.  Specific labeling of 3' termini of RNA with T4 RNA ligase.

Authors:  T E England; A G Bruce; O C Uhlenbeck
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

8.  Cellular applications of 31P and 13C nuclear magnetic resonance.

Authors:  R G Shulman; T R Brown; K Ugurbil; S Ogawa; S M Cohen; J A den Hollander
Journal:  Science       Date:  1979-07-13       Impact factor: 47.728

9.  Characterization of the E.coli poly(A) polymerase: nucleotide specificity, RNA-binding affinities and RNA structure dependence.

Authors:  S Yehudai-Resheff; G Schuster
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

10.  Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli.

Authors:  B K Mohanty; S R Kushner
Journal:  Mol Microbiol       Date:  2000-05       Impact factor: 3.501

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  110 in total

1.  Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli.

Authors:  K Yamanaka; M Inouye
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

2.  RNA quality control: degradation of defective transfer RNA.

Authors:  Zhongwei Li; Stephan Reimers; Shilpa Pandit; Murray P Deutscher
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

3.  The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase, can polyadenylate RNA.

Authors:  Björn Sohlberg; Jianqiang Huang; Stanley N Cohen
Journal:  J Bacteriol       Date:  2003-12       Impact factor: 3.490

Review 4.  mRNA decay in Escherichia coli comes of age.

Authors:  Sidney R Kushner
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

5.  Hfq affects the length and the frequency of short oligo(A) tails at the 3' end of Escherichia coli rpsO mRNAs.

Authors:  Jacques Le Derout; Marc Folichon; Federica Briani; Gianni Dehò; Philippe Régnier; Eliane Hajnsdorf
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

6.  Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins.

Authors:  Shlomit Yehudai-Resheff; Victoria Portnoy; Sivan Yogev; Noam Adir; Gadi Schuster
Journal:  Plant Cell       Date:  2003-09       Impact factor: 11.277

7.  Sequence motifs that distinguish ATP(CTP):tRNA nucleotidyl transferases from eubacterial poly(A) polymerases.

Authors:  Georges Martin; Walter Keller
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

8.  Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.

Authors:  Rafal Tomecki; Aleksandra Dmochowska; Kamil Gewartowski; Andrzej Dziembowski; Piotr P Stepien
Journal:  Nucleic Acids Res       Date:  2004-11-16       Impact factor: 16.971

9.  The response regulator SprE (RssB) is required for maintaining poly(A) polymerase I-degradosome association during stationary phase.

Authors:  Valerie J Carabetta; Thomas J Silhavy; Ileana M Cristea
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

10.  Helicase SUV3, polynucleotide phosphorylase, and mitochondrial polyadenylation polymerase form a transient complex to modulate mitochondrial mRNA polyadenylated tail lengths in response to energetic changes.

Authors:  Dennis Ding-Hwa Wang; Xuning Emily Guo; Aram Sandaldjian Modrek; Chi-Fen Chen; Phang-Lang Chen; Wen-Hwa Lee
Journal:  J Biol Chem       Date:  2014-04-25       Impact factor: 5.157

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