Literature DB >> 31435633

Cyclodipeptide synthases: a promising biotechnological tool for the synthesis of diverse 2,5-diketopiperazines.

Nicolas Canu1, Mireille Moutiez1, Pascal Belin1, Muriel Gondry1.   

Abstract

Covering: Up to mid-2019 Cyclodipeptide synthases (CDPSs) catalyse the formation of cyclodipeptides using aminoacylated-tRNA as substrates. The recent characterization of large sets of CDPSs has revealed that they can produce highly diverse products, and therefore have great potential for use in the production of different 2,5-diketopiperazines (2,5-DKPs). Sequence similarity networks (SSNs) are presented as a new, efficient way of classifying CDPSs by specificity and identifying new CDPS likely to display novel specificities. Several strategies for further increasing the diversity accessible with these enzymes are discussed here, including the incorporation of non-canonical amino acids by CDPSs and use of the remarkable diversity of 2,5-DKP-tailoring enzymes discovered in recent years.

Entities:  

Year:  2020        PMID: 31435633     DOI: 10.1039/c9np00036d

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  13 in total

1.  One-pot synthesis of 2,5-diketopiperazine with high titer and versatility using adenylation enzyme.

Authors:  Shota Karakama; Shin Suzuki; Kuniki Kino
Journal:  Appl Microbiol Biotechnol       Date:  2022-06-10       Impact factor: 4.813

2.  Efficient production of a cyclic dipeptide (cyclo-TA) using heterologous expression system of filamentous fungus Aspergillus oryzae.

Authors:  Jianzhao Qi; Haiyan Han; Dan Sui; Shengnan Tan; Changli Liu; Pengchao Wang; Chunliang Xie; Xuekui Xia; Jin-Ming Gao; Chengwei Liu
Journal:  Microb Cell Fact       Date:  2022-07-18       Impact factor: 6.352

3.  Comparative studies on similarities and differences of cyclodipeptide oxidases for installation of C-C double bonds at the diketopiperazine ring.

Authors:  Lena Mikulski; Johanna Schäfer; Kirsten Brockmeyer; Rixa Kraut; Shu-Ming Li
Journal:  Appl Microbiol Biotechnol       Date:  2020-01-27       Impact factor: 4.813

4.  Structural basis of the interaction between cyclodipeptide synthases and aminoacylated tRNA substrates.

Authors:  Gabrielle Bourgeois; Jérôme Seguin; Morgan Babin; Muriel Gondry; Yves Mechulam; Emmanuelle Schmitt
Journal:  RNA       Date:  2020-07-17       Impact factor: 4.942

Review 5.  Diketopiperazine Gels: New Horizons from the Self-Assembly of Cyclic Dipeptides.

Authors:  Marco Scarel; Silvia Marchesan
Journal:  Molecules       Date:  2021-06-03       Impact factor: 4.411

6.  Expanding the Structural Diversity of Drimentines by Exploring the Promiscuity of Two N-methyltransferases.

Authors:  Tingting Yao; Jing Liu; Enjing Jin; Zengzhi Liu; Huayue Li; Qian Che; Tianjiao Zhu; Dehai Li; Wenli Li
Journal:  iScience       Date:  2020-06-28

7.  In vivo characterization of the activities of novel cyclodipeptide oxidases: new tools for increasing chemical diversity of bioproduced 2,5-diketopiperazines in Escherichia coli.

Authors:  Fabien Le Chevalier; Isabelle Correia; Lucrèce Matheron; Morgan Babin; Mireille Moutiez; Nicolas Canu; Muriel Gondry; Olivier Lequin; Pascal Belin
Journal:  Microb Cell Fact       Date:  2020-09-07       Impact factor: 5.328

8.  Isolation, Genomic and Metabolomic Characterization of Streptomyces tendae VITAKN with Quorum Sensing Inhibitory Activity from Southern India.

Authors:  Nabila Mohammed Ishaque; Ilia Burgsdorf; Jessie James Limlingan Malit; Subhasish Saha; Roberta Teta; Daniela Ewe; Krishnan Kannabiran; Pavel Hrouzek; Laura Steindler; Valeria Costantino; Kumar Saurav
Journal:  Microorganisms       Date:  2020-01-16

9.  Flexizyme-aminoacylated shortened tRNAs demonstrate that only the aminoacylated acceptor arms of the two tRNA substrates are required for cyclodipeptide synthase activity.

Authors:  Nicolas Canu; Carine Tellier; Morgan Babin; Robert Thai; Inès Ajel; Jérôme Seguin; Olivier Cinquin; Robin Vinck; Mireille Moutiez; Pascal Belin; Jean-Christophe Cintrat; Muriel Gondry
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

Review 10.  Modifications of diketopiperazines assembled by cyclodipeptide synthases with cytochrome P450 enzymes.

Authors:  Lauritz Harken; Shu-Ming Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-02-24       Impact factor: 4.813

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