Literature DB >> 33625545

Modifications of diketopiperazines assembled by cyclodipeptide synthases with cytochrome P450 enzymes.

Lauritz Harken1, Shu-Ming Li2.   

Abstract

2,5-Diketopiperazines are the smallest cyclic peptides comprising two amino acids connected via two peptide bonds. They can be biosynthesized in nature by two different enzyme families, either by nonribosomal peptide synthetases or by cyclodipeptide synthases. Due to the stable scaffold of the diketopiperazine ring, they can serve as precursors for further modifications by different tailoring enzymes, such as methyltransferases, prenyltransferases, oxidoreductases like cyclodipeptide oxidases, 2-oxoglutarate-dependent monooxygenases and cytochrome P450 enzymes, leading to the formation of intriguing secondary metabolites. Among them, cyclodipeptide synthase-associated P450s attracted recently significant attention, since they are able to catalyse a broader variety of astonishing reactions than just oxidation by insertion of an oxygen. The P450-catalysed reactions include hydroxylation at a tertiary carbon, aromatisation of the diketopiperazine ring, intramolecular and intermolecular carbon-carbon and carbon-nitrogen bond formation of cyclodipeptides and nucleobase transfer reactions. Elucidation of the crystal structures of three P450s as cyclodipeptide dimerases provides a structural basis for understanding the reaction mechanism and generating new enzymes by protein engineering. This review summarises recent publications on cyclodipeptide modifications by P450s.Key Points• Intriguing reactions catalysed by cyclodipeptide synthase-associated cytochrome P450s• Homo- and heterodimerisation of diketopiperazines• Coupling of guanine and hypoxanthine with diketopiperazines.

Entities:  

Keywords:  Cyclodipeptides; Cytochrome P450; Diversity of cyclodipeptides; Enzymatic modification

Mesh:

Substances:

Year:  2021        PMID: 33625545      PMCID: PMC7954767          DOI: 10.1007/s00253-021-11178-1

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  52 in total

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Authors:  M Katagiri; B N Ganguli; I C Gunsalus
Journal:  J Biol Chem       Date:  1968-06-25       Impact factor: 5.157

2.  Natural Products as Sources of New Drugs over the Nearly Four Decades from 01/1981 to 09/2019.

Authors:  David J Newman; Gordon M Cragg
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3.  Synthesis and structure-activity relationship study of antimicrotubule agents phenylahistin derivatives with a didehydropiperazine-2,5-dione structure.

Authors:  Yuri Yamazaki; Koji Tanaka; Benjamin Nicholson; Gordafaried Deyanat-Yazdi; Barbara Potts; Tomoko Yoshida; Akiko Oda; Takayoshi Kitagawa; Sumie Orikasa; Yoshiaki Kiso; Hiroyuki Yasui; Miki Akamatsu; Takumi Chinen; Takeo Usui; Yuki Shinozaki; Fumika Yakushiji; Brian R Miller; Saskia Neuteboom; Michael Palladino; Kaneo Kanoh; George Kenneth Lloyd; Yoshio Hayashi
Journal:  J Med Chem       Date:  2012-01-20       Impact factor: 7.446

4.  A tRNA-dependent two-enzyme pathway for the generation of singly and doubly methylated ditryptophan 2,5-diketopiperazines.

Authors:  Tobias W Giessen; Alexander M von Tesmar; Mohamed A Marahiel
Journal:  Biochemistry       Date:  2013-06-07       Impact factor: 3.162

5.  A Six-Oxidase Cascade for Tandem C-H Bond Activation Revealed by Reconstitution of Bicyclomycin Biosynthesis.

Authors:  Song Meng; Wei Han; Juan Zhao; Xiao-Hong Jian; Hai-Xue Pan; Gong-Li Tang
Journal:  Angew Chem Int Ed Engl       Date:  2017-12-12       Impact factor: 15.336

6.  Identification and structural basis of the reaction catalyzed by CYP121, an essential cytochrome P450 in Mycobacterium tuberculosis.

Authors:  Pascal Belin; Marie Hélène Le Du; Alistair Fielding; Olivier Lequin; Mickaël Jacquet; Jean-Baptiste Charbonnier; Alain Lecoq; Robert Thai; Marie Courçon; Cédric Masson; Christophe Dugave; Roger Genet; Jean-Luc Pernodet; Muriel Gondry
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-22       Impact factor: 11.205

7.  Structure and Function of NzeB, a Versatile C-C and C-N Bond-Forming Diketopiperazine Dimerase.

Authors:  Vikram V Shende; Yogan Khatri; Sean A Newmister; Jacob N Sanders; Petra Lindovska; Fengan Yu; Tyler J Doyon; Justin Kim; K N Houk; Mohammad Movassaghi; David H Sherman
Journal:  J Am Chem Soc       Date:  2020-09-30       Impact factor: 15.419

8.  Reprogramming Escherichia coli for the production of prenylated indole diketopiperazine alkaloids.

Authors:  Pavlina Dubois; Isabelle Correia; Fabien Le Chevalier; Steven Dubois; Isabelle Jacques; Nicolas Canu; Mireille Moutiez; Robert Thai; Muriel Gondry; Olivier Lequin; Pascal Belin
Journal:  Sci Rep       Date:  2019-06-25       Impact factor: 4.379

9.  Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.

Authors:  Chenghai Sun; Zhenyao Luo; Wenlu Zhang; Wenya Tian; Haidong Peng; Zhi Lin; Zixin Deng; Bostjan Kobe; Xinying Jia; Xudong Qu
Journal:  Nat Commun       Date:  2020-12-07       Impact factor: 14.919

10.  Genome mining of cyclodipeptide synthases unravels unusual tRNA-dependent diketopiperazine-terpene biosynthetic machinery.

Authors:  Tingting Yao; Jing Liu; Zengzhi Liu; Tong Li; Huayue Li; Qian Che; Tianjiao Zhu; Dehai Li; Qianqun Gu; Wenli Li
Journal:  Nat Commun       Date:  2018-10-05       Impact factor: 14.919

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2.  Conversion of viridicatic acid to crustosic acid by cytochrome P450 enzyme-catalysed hydroxylation and spontaneous cyclisation.

Authors:  Jenny Zhou; Shu-Ming Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-11-11       Impact factor: 4.813

3.  Widely Distributed Bifunctional Bacterial Cytochrome P450 Enzymes Catalyze both Intramolecular C-C Bond Formation in cyclo-l-Tyr-l-Tyr and Its Coupling with Nucleobases.

Authors:  Jing Liu; Lauritz Harken; Yiling Yang; Xiulan Xie; Shu-Ming Li
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Review 4.  Diketopiperazine Gels: New Horizons from the Self-Assembly of Cyclic Dipeptides.

Authors:  Marco Scarel; Silvia Marchesan
Journal:  Molecules       Date:  2021-06-03       Impact factor: 4.411

  4 in total

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