Literature DB >> 31434704

The KDM4/JMJD2 histone demethylases are required for hematopoietic stem cell maintenance.

Karl Agger1,2, Koutarou Nishimura1,2,3,4, Satoru Miyagi1, Jan-Erik Messling1,2, Kasper Dindler Rasmussen1,2, Kristian Helin1,2,3,4.   

Abstract

KDM4/JMJD2 are H3K9- and H3K36-specific demethylases, which are considered promising therapeutic targets for the treatment of acute myeloid leukemia (AML) harboring MLL translocations. Here, we investigate the long-term effects of depleting KDM4 activity on normal hematopoiesis to probe potential side effects of continuous inhibition of these enzymes. Utilizing conditional Kdm4a/Kdm4b/Kdm4c triple-knockout mice, we show that KDM4 activity is required for hematopoietic stem cell (HSC) maintenance in vivo. The knockout of the KDM4 demethylases leads to accumulation of H3K9me3 on transcription start sites and the corresponding downregulation of expression of several genes in HSCs. We show that 2 of these genes, Taf1b and Nom1, are essential for the maintenance of hematopoietic cells. Taken together, our results show that the KDM4 demethylases are required for the expression of genes essential for the long-term maintenance of normal hematopoiesis.
© 2019 by The American Society of Hematology.

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Year:  2019        PMID: 31434704      PMCID: PMC6776794          DOI: 10.1182/blood.2019000855

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  20 in total

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Authors:  Barna D Fodor; Stefan Kubicek; Masato Yonezawa; Roderick J O'Sullivan; Roopsha Sengupta; Laura Perez-Burgos; Susanne Opravil; Karl Mechtler; Gunnar Schotta; Thomas Jenuwein
Journal:  Genes Dev       Date:  2006-05-31       Impact factor: 11.361

2.  The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36.

Authors:  Robert J Klose; Kenichi Yamane; Yangjin Bae; Dianzheng Zhang; Hediye Erdjument-Bromage; Paul Tempst; Jiemin Wong; Yi Zhang
Journal:  Nature       Date:  2006-05-28       Impact factor: 49.962

3.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

4.  Defining a Cancer Dependency Map.

Authors:  Aviad Tsherniak; Francisca Vazquez; Phil G Montgomery; Barbara A Weir; Gregory Kryukov; Glenn S Cowley; Stanley Gill; William F Harrington; Sasha Pantel; John M Krill-Burger; Robin M Meyers; Levi Ali; Amy Goodale; Yenarae Lee; Guozhi Jiang; Jessica Hsiao; William F J Gerath; Sara Howell; Erin Merkel; Mahmoud Ghandi; Levi A Garraway; David E Root; Todd R Golub; Jesse S Boehm; William C Hahn
Journal:  Cell       Date:  2017-07-27       Impact factor: 41.582

5.  The testis-enriched histone demethylase, KDM4D, regulates methylation of histone H3 lysine 9 during spermatogenesis in the mouse but is dispensable for fertility.

Authors:  Naoki Iwamori; Ming Zhao; Marvin L Meistrich; Martin M Matzuk
Journal:  Biol Reprod       Date:  2011-02-03       Impact factor: 4.285

6.  Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases.

Authors:  Johnathan R Whetstine; Amanda Nottke; Fei Lan; Maite Huarte; Sarit Smolikov; Zhongzhou Chen; Eric Spooner; En Li; Gongyi Zhang; Monica Colaiacovo; Yang Shi
Journal:  Cell       Date:  2006-04-06       Impact factor: 41.582

7.  Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq.

Authors:  Janus S Jakobsen; Frederik O Bagger; Marie S Hasemann; Mikkel B Schuster; Anne-Katrine Frank; Johannes Waage; Kristoffer Vitting-Seerup; Bo T Porse
Journal:  BMC Genomics       Date:  2015-02-05       Impact factor: 3.969

8.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Authors:  Michael I Love; Wolfgang Huber; Simon Anders
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

10.  Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.

Authors:  Robin M Meyers; Jordan G Bryan; James M McFarland; Barbara A Weir; Ann E Sizemore; Han Xu; Neekesh V Dharia; Phillip G Montgomery; Glenn S Cowley; Sasha Pantel; Amy Goodale; Yenarae Lee; Levi D Ali; Guozhi Jiang; Rakela Lubonja; William F Harrington; Matthew Strickland; Ting Wu; Derek C Hawes; Victor A Zhivich; Meghan R Wyatt; Zohra Kalani; Jaime J Chang; Michael Okamoto; Kimberly Stegmaier; Todd R Golub; Jesse S Boehm; Francisca Vazquez; David E Root; William C Hahn; Aviad Tsherniak
Journal:  Nat Genet       Date:  2017-10-30       Impact factor: 38.330

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  14 in total

1.  Heterozygous Variants in KDM4B Lead to Global Developmental Delay and Neuroanatomical Defects.

Authors:  Anna R Duncan; Antonio Vitobello; Stephan C Collins; Valerie E Vancollie; Christopher J Lelliott; Lance Rodan; Jiahai Shi; Ann R Seman; Emanuele Agolini; Antonio Novelli; Paolo Prontera; Maria J Guillen Sacoto; Teresa Santiago-Sim; Aurélien Trimouille; Cyril Goizet; Mathilde Nizon; Ange-Line Bruel; Christophe Philippe; Patricia E Grant; Monica H Wojcik; Joan Stoler; Casie A Genetti; Marieke F van Dooren; Saskia M Maas; Marielle Alders; Laurence Faivre; Arthur Sorlin; Grace Yoon; Binnaz Yalcin; Pankaj B Agrawal
Journal:  Am J Hum Genet       Date:  2020-11-23       Impact factor: 11.025

Review 2.  Recent Advances with KDM4 Inhibitors and Potential Applications.

Authors:  Qiong Wu; Brandon Young; Yan Wang; Andrew M Davidoff; Zoran Rankovic; Jun Yang
Journal:  J Med Chem       Date:  2022-07-15       Impact factor: 8.039

3.  KDM4 inhibitor SD49-7 attenuates leukemia stem cell via KDM4A/MDM2/p21CIP1 axis.

Authors:  Yinghui Li; Chaoqun Wang; Huier Gao; Jiali Gu; Yiran Zhang; Yingyi Zhang; Min Xie; Xuelian Cheng; Ming Yang; Wenshan Zhang; Yafang Li; Mei He; Hui Xu; Hexiao Zhang; Qing Ji; Tianhua Ma; Sheng Ding; Yu Zhao; Yingdai Gao
Journal:  Theranostics       Date:  2022-06-21       Impact factor: 11.600

4.  Histone demethylase KDM4C activates HIF1α/VEGFA signaling through the costimulatory factor STAT3 in NSCLC.

Authors:  Xiaowei Wu; Yu Deng; Yukun Zu; Jin Yin
Journal:  Am J Cancer Res       Date:  2020-02-01       Impact factor: 6.166

5.  A KDM4A-PAF1-mediated epigenomic network is essential for acute myeloid leukemia cell self-renewal and survival.

Authors:  Matthew E Massett; Laura Monaghan; Shaun Patterson; Niamh Mannion; Roderick P Bunschoten; Alex Hoose; Sandra Marmiroli; Robert M J Liskamp; Heather G Jørgensen; David Vetrie; Alison M Michie; Xu Huang
Journal:  Cell Death Dis       Date:  2021-06-03       Impact factor: 8.469

6.  KDM4A regulates myogenesis by demethylating H3K9me3 of myogenic regulatory factors.

Authors:  Qi Zhu; Feng Liang; Shufang Cai; Xiaorong Luo; Tianqi Duo; Ziyun Liang; Zuyong He; Yaosheng Chen; Delin Mo
Journal:  Cell Death Dis       Date:  2021-05-19       Impact factor: 8.469

7.  The KDM4B-CCAR1-MED1 axis is a critical regulator of osteoclast differentiation and bone homeostasis.

Authors:  Sun-Ju Yi; You-Jee Jang; Hye-Jung Kim; Kyubin Lee; Hyerim Lee; Yeojin Kim; Junil Kim; Seon Young Hwang; Jin Sook Song; Hitoshi Okada; Jae-Il Park; Kyuho Kang; Kyunghwan Kim
Journal:  Bone Res       Date:  2021-05-25       Impact factor: 13.567

8.  Histone Lysine Demethylase JMJD2D/KDM4D and Family Members Mediate Effects of Chronic Social Defeat Stress on Mouse Hippocampal Neurogenesis and Mood Disorders.

Authors:  Swati Maitra; Nitin Khandelwal; Scherazad Kootar; Pooja Sant; Salil S Pathak; Sujatha Reddy; Annapoorna P K; Upadhyayula Suryanarayana Murty; Sumana Chakravarty; Arvind Kumar
Journal:  Brain Sci       Date:  2020-11-09

Review 9.  Molecular Mechanisms of Senescence and Implications for the Treatment of Myeloid Malignancies.

Authors:  Philipp Ernst; Florian H Heidel
Journal:  Cancers (Basel)       Date:  2021-02-04       Impact factor: 6.639

10.  Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins.

Authors:  Purna Chaitanya Konduri; Tianyuan Wang; Narges Salamat; Li Zhang
Journal:  Cells       Date:  2020-03-22       Impact factor: 6.600

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