Literature DB >> 31433947

Strongly Coupled Redox-Linked Conformational Switching at the Active Site of the Non-Heme Iron-Dependent Dioxygenase, TauD.

Christopher W John1, Greg M Swain1, Robert P Hausinger2,3, Denis A Proshlyakov1.   

Abstract

2-Oxoglutarate (2OG)-dependent dioxygenases catalyze C-H activation while performing a wide range of chemical transformations. In contrast to their heme analogues, non-heme iron centers afford greater structural flexibility with important implications for their diverse catalytic mechanisms. We characterize an in situ structural model of the putative transient ferric intermediate of 2OG:taurine dioxygenase (TauD) by using a combination of spectroelectrochemical and semiempirical computational methods, demonstrating that the Fe(III/II) transition involves a substantial, fully reversible, redox-linked conformational change at the active site. This rearrangement alters the apparent redox potential of the active site between -127 mV for reduction of the ferric state and +171 mV for oxidation of the ferrous state of the 2OG-Fe-TauD complex. Structural perturbations exhibit limited sensitivity to mediator concentrations and potential pulse duration. Similar changes were observed in the Fe-TauD and taurine-2OG-Fe-TauD complexes, thus attributing the reorganization to the protein moiety rather than the cosubstrates. Redox-difference infrared spectra indicate a reorganization of the protein backbone in addition to the involvement of carboxylate and histidine ligands. Quantitative modeling of the transient redox response using two alternative reaction schemes across a variety of experimental conditions strongly supports the proposal for intrinsic protein reorganization as the origin of the experimental observations.

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Year:  2019        PMID: 31433947      PMCID: PMC7092797          DOI: 10.1021/acs.jpcb.9b05866

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  41 in total

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Authors:  Kaustuv Mittra; Michael T Green
Journal:  J Am Chem Soc       Date:  2019-03-20       Impact factor: 15.419

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6.  Stopped-flow kinetic analysis of Escherichia coli taurine/alpha-ketoglutarate dioxygenase: interactions with alpha-ketoglutarate, taurine, and oxygen.

Authors:  M J Ryle; R Padmakumar; R P Hausinger
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

7.  Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron.

Authors:  Andreas Karlsson; Juanito V Parales; Rebecca E Parales; David T Gibson; Hans Eklund; S Ramaswamy
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8.  Fourier Transform Infrared Spectrovoltammetry and Quantitative Modeling of Analytes in Kinetically Constrained Redox Mixtures.

Authors:  Christopher W John; Denis A Proshlyakov
Journal:  Anal Chem       Date:  2019-07-12       Impact factor: 6.986

9.  Metal and substrate binding to an Fe(II) dioxygenase resolved by UV spectroscopy with global regression analysis.

Authors:  Piotr K Grzyska; Robert P Hausinger; Denis A Proshlyakov
Journal:  Anal Biochem       Date:  2009-11-20       Impact factor: 3.365

10.  KinESim: Pre-equilibrium kinetic simulation of electrochemical reactions.

Authors:  Christopher W John; Denis A Proshlyakov
Journal:  J Open Source Softw       Date:  2019-08-23
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  3 in total

1.  Structural Origin of the Large Redox-Linked Reorganization in the 2-Oxoglutarate Dependent Oxygenase, TauD.

Authors:  Christopher W John; Robert P Hausinger; Denis A Proshlyakov
Journal:  J Am Chem Soc       Date:  2019-09-11       Impact factor: 15.419

2.  G3F: Global, Multidimensional Spectral Regression Analysis.

Authors:  Allison M Stettler; Christopher W John; Yegor D Proshlyakov; Denis A Proshlyakov
Journal:  J Open Source Softw       Date:  2019-08-27

Review 3.  Spectroscopic and in vitro Investigations of Fe2+ /α-Ketoglutarate-Dependent Enzymes Involved in Nucleic Acid Repair and Modification.

Authors:  David Schmidl; Niko S W Lindlar Né Jonasson; Annika Menke; Sabine Schneider; Lena J Daumann
Journal:  Chembiochem       Date:  2022-02-15       Impact factor: 3.461

  3 in total

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