Literature DB >> 31422913

Defining the Identity and Dynamics of Adult Gastric Isthmus Stem Cells.

Seungmin Han1, Juergen Fink2, David J Jörg3, Eunmin Lee4, Min Kyu Yum1, Lemonia Chatzeli1, Sebastian R Merker5, Manon Josserand6, Teodora Trendafilova6, Amanda Andersson-Rolf2, Catherine Dabrowska6, Hyunki Kim6, Ronald Naumann7, Ji-Hyun Lee8, Nobuo Sasaki9, Richard Lester Mort10, Onur Basak11, Hans Clevers11, Daniel E Stange5, Anna Philpott12, Jong Kyoung Kim13, Benjamin D Simons14, Bon-Kyoung Koo15.   

Abstract

The gastric corpus epithelium is the thickest part of the gastrointestinal tract and is rapidly turned over. Several markers have been proposed for gastric corpus stem cells in both isthmus and base regions. However, the identity of isthmus stem cells (IsthSCs) and the interaction between distinct stem cell populations is still under debate. Here, based on unbiased genetic labeling and biophysical modeling, we show that corpus glands are compartmentalized into two independent zones, with slow-cycling stem cells maintaining the base and actively cycling stem cells maintaining the pit-isthmus-neck region through a process of "punctuated" neutral drift dynamics. Independent lineage tracing based on Stmn1 and Ki67 expression confirmed that rapidly cycling IsthSCs maintain the pit-isthmus-neck region. Finally, single-cell RNA sequencing (RNA-seq) analysis is used to define the molecular identity and lineage relationship of a single, cycling, IsthSC population. These observations define the identity and functional behavior of IsthSCs.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Lgr5; Troy; biophysical modeling; deep tissue imaging; gastric corpus isthmus stem cell; intestine; punctuated neutral drift; single-cell RNA-seq; two stem cell compartments; unbiased genetic labeling

Mesh:

Substances:

Year:  2019        PMID: 31422913      PMCID: PMC6739486          DOI: 10.1016/j.stem.2019.07.008

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  46 in total

1.  Reversible drug-induced oxyntic atrophy in rats.

Authors:  J R Goldenring; G S Ray; R J Coffey; P C Meunier; P J Haley; T B Barnes; B D Car
Journal:  Gastroenterology       Date:  2000-06       Impact factor: 22.682

2.  Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.

Authors:  Hugo J Snippert; Laurens G van der Flier; Toshiro Sato; Johan H van Es; Maaike van den Born; Carla Kroon-Veenboer; Nick Barker; Allon M Klein; Jacco van Rheenen; Benjamin D Simons; Hans Clevers
Journal:  Cell       Date:  2010-10-01       Impact factor: 41.582

3.  Intestinal stem cell replacement follows a pattern of neutral drift.

Authors:  Carlos Lopez-Garcia; Allon M Klein; Benjamin D Simons; Douglas J Winton
Journal:  Science       Date:  2010-09-23       Impact factor: 47.728

4.  Mature chief cells are cryptic progenitors for metaplasia in the stomach.

Authors:  Ki Taek Nam; Hyuk-Joon Lee; Josane F Sousa; Victoria G Weis; Ryan L O'Neal; Paul E Finke; Judith Romero-Gallo; Guanglu Shi; Jason C Mills; Richard M Peek; Stephen F Konieczny; James R Goldenring
Journal:  Gastroenterology       Date:  2010-09-18       Impact factor: 22.682

5.  A focus on parietal cells as a renewing cell population.

Authors:  Sherif M Karam
Journal:  World J Gastroenterol       Date:  2010-02-07       Impact factor: 5.742

6.  Alterations in gastric mucosal lineages induced by acute oxyntic atrophy in wild-type and gastrin-deficient mice.

Authors:  Sachiyo Nomura; Hirokazu Yamaguchi; Masako Ogawa; Timothy C Wang; Jeffrey R Lee; James R Goldenring
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2005-02       Impact factor: 4.052

7.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

8.  Multipotential stem cells in adult mouse gastric epithelium.

Authors:  Matthew Bjerknes; Hazel Cheng
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2002-09       Impact factor: 4.052

9.  Differential expression analysis for sequence count data.

Authors:  Simon Anders; Wolfgang Huber
Journal:  Genome Biol       Date:  2010-10-27       Impact factor: 13.583

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  30 in total

1.  A Quantitative Lineage-Tracing Approach to Understand Morphogenesis in Gut.

Authors:  Svetlana Ulyanchenko; Jordi Guiu
Journal:  Methods Mol Biol       Date:  2021

2.  ELAPOR1 is a secretory granule maturation-promoting factor that is lost during paligenosis.

Authors:  Charles J Cho; Dongkook Park; Jason C Mills
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2021-11-24       Impact factor: 4.052

Review 3.  Paligenosis: Cellular Remodeling During Tissue Repair.

Authors:  Jeffrey W Brown; Charles J Cho; Jason C Mills
Journal:  Annu Rev Physiol       Date:  2021-10-27       Impact factor: 19.318

4.  Single-Cell Transcriptional Analyses Identify Lineage-Specific Epithelial Responses to Inflammation and Metaplastic Development in the Gastric Corpus.

Authors:  Kevin A Bockerstett; Scott A Lewis; Christine N Noto; Eric L Ford; José B Saenz; Nicholas M Jackson; Tae-Hyuk Ahn; Jason C Mills; Richard J DiPaolo
Journal:  Gastroenterology       Date:  2020-08-21       Impact factor: 22.682

Review 5.  The cellular origins of cancer with particular reference to the gastrointestinal tract.

Authors:  Malcolm R Alison
Journal:  Int J Exp Pathol       Date:  2020-08-14       Impact factor: 1.925

6.  GPR30-Expressing Gastric Chief Cells Do Not Dedifferentiate But Are Eliminated via PDK-Dependent Cell Competition During Development of Metaplasia.

Authors:  Masahiro Hata; Hiroto Kinoshita; Yoku Hayakawa; Mitsuru Konishi; Mayo Tsuboi; Yukiko Oya; Ken Kurokawa; Yuki Hayata; Hayato Nakagawa; Keisuke Tateishi; Hiroaki Fujiwara; Yoshihiro Hirata; Daniel L Worthley; Yuki Muranishi; Takahisa Furukawa; Shunsuke Kon; Hiroyuki Tomita; Timothy C Wang; Kazuhiko Koike
Journal:  Gastroenterology       Date:  2020-02-04       Impact factor: 22.682

Review 7.  Cellular Plasticity, Reprogramming, and Regeneration: Metaplasia in the Stomach and Beyond.

Authors:  James R Goldenring; Jason C Mills
Journal:  Gastroenterology       Date:  2021-10-30       Impact factor: 22.682

Review 8.  Tracing the Dynamics of Stem Cell Fate.

Authors:  Lemonia Chatzeli; Benjamin D Simons
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-06-01       Impact factor: 9.708

Review 9.  The frontier of live tissue imaging across space and time.

Authors:  Qiang Huang; Aliesha Garrett; Shree Bose; Stephanie Blocker; Anne C Rios; Hans Clevers; Xiling Shen
Journal:  Cell Stem Cell       Date:  2021-04-01       Impact factor: 24.633

Review 10.  Stem cells and origins of cancer in the upper gastrointestinal tract.

Authors:  Yoku Hayakawa; Hiroshi Nakagawa; Anil K Rustgi; Jianwen Que; Timothy C Wang
Journal:  Cell Stem Cell       Date:  2021-06-14       Impact factor: 25.269

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