| Literature DB >> 31419978 |
Jiaqi Tan1, Jin Wang1, Chuang Yang1, Chongzun Zhu1, Geyong Guo1, Jin Tang2, Hao Shen3.
Abstract
BACKGROUND: Staphylococcal aureus (S. aureus) has become the leading causative pathogen of Prosthetic Joint Infection (PJI), which is the most devastating complication after arthroplasty surgeries. Due to the biofilm formation ability and emergence of multiple-drugs resistance strains of S. aureus, it has become an urgency to find new anti-staphylococcal agents to establish effective prophylaxis and treatment strategy for PJI. Extracted from a traditional Chinese herb, berberine is proved active in inhibiting S. aureus, while whether it exerts the same effect on PJI-related S. aureus remains unknown. This study aims to investigate the antimicrobial activity of berbrine against clinical derived PJI-related S. aureus and whether its inhibiting efficacy is associated with subtypes of S. aureus.Entities:
Keywords: Berberine; Biofilm; Multi-locus sequence types; Prosthetic joint infection; Staphylococcal aureus
Mesh:
Substances:
Year: 2019 PMID: 31419978 PMCID: PMC6697971 DOI: 10.1186/s12906-019-2558-9
Source DB: PubMed Journal: BMC Complement Altern Med ISSN: 1472-6882 Impact factor: 3.659
Primers of quantitation Real-time PCR (qRT-PCR) used in this study
| Gene Name | Primer | Sequences (5′–3′) |
|---|---|---|
|
| F | TGCTGGCGCAGTCAATACTA |
| R | CATGGCAAGCGGTTCATACT | |
|
| F | CCTTATTTTCAGAGAAGGGGTATG |
| R | CGAATACACTTCATCTTTGAATTG | |
|
| F | GTCAAGTTATGGCGACAGGA |
| R | GCGTCACTGTTGTAGGATCA | |
|
| F | GTCGTGAAACAACAAAAAGACGCA |
| R | TTAATCATGAGCTTGTGCCTCCTC | |
|
| F | GCATCGTATCATCGGAGGTA |
| R | GGTAACGCAATCGCTGTAGT | |
|
| F | ATATTGGCACAGAAATTCAAAAGA |
| R | TCATAAGCGTCTACACCTTTACGA | |
|
| F | CGCTTGCCATTGTCCTTGAT |
| R | CTTGGTCCATGCGATCCATA | |
|
| F | AAGAAGACGGCAACAAGCCT |
| R | AGGCTTGTTGCCGTCTTCTT | |
|
| F | ATGGACGTGGCTTAGCGTAT |
| R | TAGCCAAGCCTTGACGAACT | |
|
| F | AATGGTTGCACGTGGTGACA |
| R | TAGATTGCGTTGGCAACGTC |
*: pyk was used as the internal reference gene.
Expression fold changes of S. aureus ST1792 biofilm related genes in berberine
| Category | Gene | Annotation | Log2 (Fold-change) |
|---|---|---|---|
| Biofilm | |||
| PIA |
| poly-beta-1,6-N-acetyl-D-glucosamine synthase | 2.22 |
|
| biofilm PGA synthesis lipoprotein PgaB | 1.85 | |
|
| TetR/AcrR family transcriptional regulator | −2.32 | |
|
| regulatory protein spx | −1.42 | |
|
| sensor histidine kinase ResE | 1.08 | |
| Protein | |||
|
| fibronectin-binding protein A | 1.53 | |
|
| fibronectin-binding protein B | 1.51 | |
|
| immunoglobulin G-binding protein A | 2.60 | |
|
| surface protein G | 2.22 | |
| eDNA | |||
|
| thermonuclease | 2.02 | |
| cidA | holin-like protein | 2.06 | |
|
| murein hydrolase regulator LrgA | −2.59 | |
|
| hydrolase activity | −2.71 | |
| Biofilm regulators | |||
|
| accessory gene regulators | – | |
|
| RNA polymerase sigma-B factor | – | |
MLST and Berberine MIC values of 18 clinical S.aureus isolates
| MLST Type | Series number | MIC (μg/ml) |
|---|---|---|
| ST 15 | A | 128 |
| ST 17 | B | 128 |
| ST 188 | C | 128 |
| ST 1281 | D, H | 128 |
| ST 39 | E | 512 |
| ST 630 | F, P, Q | 128 |
| ST 1792 | G | 128 |
| ST 7 | I, J, K | 128 |
| ST 239 | L, M, N | 64 |
| ST 88 | O | 128 |
| ST 8 | R | 128 |
Fig. 1Workflow of transcriptome assembly and annotation for Staphyloccocus aureus
Fig. 2Growth kinetics of clinical S.aureus in the presence of different berberine concentrations after incubation of 0 h (a); 2 h (b); 6 h (c); 12 h (d) and 24 h (e)
Fig. 3Inhibitory effects of berberine on clinical S.aureus biofilm formation. S. aureus strains were inoculated into TSB and cultured with different concentrations of berberine. Wells containing 1% DMSO and bacteria was the bacterial growth control (GC). Data are presented as mean ± standard deviation. *Significance was determined at P < 0.05 with comparison to the control group
Fig. 4Differentially expressed genes in berberine group compared to TSB control group. a Totally 795 significantly differentially expressed genes were detected, of which 336 were up-regulated and 459 were down-regulated (Significance: log2 Fold-change≥1 and P-value < 0.05). b Volcano-plot map of 2596 detectable differentially expressed genes Red: significantly up-regulated genes; blue: significantly down-regulated genes, grey: non- significantly regulated genes (log2 Fold-change < 1 or P-value> 0.05). Wells containing 1% DMSO and bacteria was the bacterial growth control (GC)
The fold-change determined by RNA-seq and qRT-PCR of selected genes
| Gene Name | Gene Annotation | Log2 Fold-change | |
|---|---|---|---|
| RNA-seq | qRT-PCR | ||
|
| poly-beta-1,6-N-acetyl-D-glucosamine synthase | 2.22 | 2.12 |
|
| Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR | −2.31 | −2.45 |
|
| Fibronectin-binding protein A | 1.53 | 1.66 |
|
| murein hydrolase regulator LrgA | −2.59 | − 2.42 |
|
| hydrolase activity | −2.71 | −2.51 |
|
| Holin-like protein CidA | 2.06 | 2.15 |
|
| sensor histidine kinase | 1.08 | 1.17 |
|
| immunoglobulin G-binding protein A | 2.60 | 2.72 |
|
| thermonuclease | 2.02 | 2.10 |