Literature DB >> 31419124

Synthetic Biology Tools for the Fast-Growing Marine Bacterium Vibrio natriegens.

Tanya Tschirhart1, Vrinda Shukla2, Erin E Kelly3, Zachary Schultzhaus3, Erin NewRingeisen2, Jeffrey S Erickson2, Zheng Wang2, Whitney Garcia4, Emaleigh Curl5, Robert G Egbert6, Enoch Yeung7, Gary J Vora2.   

Abstract

The fast-growing nonmodel marine bacterium Vibrio natriegens has recently garnered attention as a host for molecular biology and biotechnology applications. In order to further its capabilities as a synthetic biology chassis, we have characterized a wide range of genetic parts and tools for use in V. natriegens. These parts include many commonly used resistance markers, promoters, ribosomal binding sites, reporters, terminators, degradation tags, origin of replication sequences, and plasmid backbones. We have characterized the behavior of these parts in different combinations and have compared their functionality in V. natriegens and Escherichia coli. Plasmid stability over time, plasmid copy numbers, and production load on the cells were also evaluated. Additionally, we tested constructs for chemical and optogenetic induction and characterized basic engineered circuit behavior in V. natriegens. The results indicate that, while most parts and constructs work similarly in the two organisms, some deviate significantly. Overall, these results will serve as a primer for anyone interested in engineering V. natriegens and will aid in developing more robust synthetic biology principles and approaches for this nonmodel chassis.

Entities:  

Keywords:  UBER; Vibrio; light plate apparatus; marine; optogenetics

Mesh:

Substances:

Year:  2019        PMID: 31419124     DOI: 10.1021/acssynbio.9b00176

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  20 in total

1.  Genome-Scale Modeling and Systems Metabolic Engineering of Vibrio natriegens for the Production of 1,3-Propanediol.

Authors:  Ye Zhang; Dehua Liu; Zhen Chen
Journal:  Methods Mol Biol       Date:  2023

2.  Melanin Produced by the Fast-Growing Marine Bacterium Vibrio natriegens through Heterologous Biosynthesis: Characterization and Application.

Authors:  Zheng Wang; Tanya Tschirhart; Zachary Schultzhaus; Erin E Kelly; Amy Chen; Eunkeu Oh; Okhil Nag; Evan R Glaser; Eunkyoung Kim; Pamela F Lloyd; Paul T Charles; Weiyao Li; Dagmar Leary; Jaimee Compton; Daniel A Phillips; Ali Dhinojwala; Gregory F Payne; Gary J Vora
Journal:  Appl Environ Microbiol       Date:  2020-02-18       Impact factor: 4.792

3.  High-cell-density fed-batch cultivations of Vibrio natriegens.

Authors:  Isabel Thiele; Björn Gutschmann; Linus Aulich; Marcel Girard; Peter Neubauer; Sebastian L Riedel
Journal:  Biotechnol Lett       Date:  2021-05-19       Impact factor: 2.461

4.  Overexpression of recombinant proteins containing non-canonical amino acids in Vibrio natriegens: p-azido-L-phenylalanine as coupling site for 19F-tags.

Authors:  Karina A Stadler; Walter Becker; Barbara Darnhofer; Ruth Birner-Gruenberger; Klaus Zangger
Journal:  Amino Acids       Date:  2022-04-13       Impact factor: 3.789

5.  Exploiting the Feedstock Flexibility of the Emergent Synthetic Biology Chassis Vibrio natriegens for Engineered Natural Product Production.

Authors:  Gregory A Ellis; Tanya Tschirhart; Joseph Spangler; Scott A Walper; Igor L Medintz; Gary J Vora
Journal:  Mar Drugs       Date:  2019-11-30       Impact factor: 5.118

6.  Genetic Code Expansion of Vibrio natriegens.

Authors:  Eden Ozer; Lital Alfonta
Journal:  Front Bioeng Biotechnol       Date:  2021-02-26

7.  Engineering Vibrio sp. SP1 for the production of carotenoids directly from brown macroalgae.

Authors:  Sungwoo Park; Sung Won Cho; Yungyu Lee; Mincheol Choi; Jina Yang; Hojun Lee; Sang Woo Seo
Journal:  Comput Struct Biotechnol J       Date:  2021-03-10       Impact factor: 7.271

8.  Biodegradation of aromatic pollutants meets synthetic biology.

Authors:  Liang Xiang; Guoqiang Li; Luan Wen; Cong Su; Yong Liu; Hongzhi Tang; Junbiao Dai
Journal:  Synth Syst Biotechnol       Date:  2021-07-01

9.  A modular chromosomally integrated toolkit for ectopic gene expression in Vibrio cholerae.

Authors:  Triana N Dalia; Jennifer L Chlebek; Ankur B Dalia
Journal:  Sci Rep       Date:  2020-09-21       Impact factor: 4.379

10.  Development and comparison of cell-free protein synthesis systems derived from typical bacterial chassis.

Authors:  Liyuan Zhang; Xiaomei Lin; Ting Wang; Wei Guo; Yuan Lu
Journal:  Bioresour Bioprocess       Date:  2021-07-06
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