Literature DB >> 31413079

Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study.

Georges Ambaraghassi1,2, Philippe J Dufresne3, Simon F Dufresne1,2,4, Émilie Vallières2,5,6, José F Muñoz7, Christina A Cuomo7, Elizabeth L Berkow8, Shawn R Lockhart8, Me-Linh Luong9,2.   

Abstract

Candida auris is an emerging multidrug-resistant yeast that has been systematically incorrectly identified by phenotypic methods in clinical microbiology laboratories. The Vitek 2 automated identification system (bioMérieux) recently included C. auris in its database (version 8.01). We evaluated the performance of the Vitek 2 YST ID card to identify C. auris and related species. A panel of 44 isolates of Candida species (C. auris, n = 35; Candida haemulonii, n = 5; Candida duobushaemulonii, n = 4) were tested by three different hospital-based microbiology laboratories. Among 35 isolates of C. auris, Vitek 2 yielded correct identification in an average of 52% of tested samples. Low-discrimination (LD) results with an inability to distinguish between C. auris, C. duobushaemulonii, and Candida famata were obtained in an average of 27% of samples. Incorrect identification results were obtained in an average of 21% of samples, the majority (91%) of which were reported as C. duobushaemulonii and the remaining 9% of which were reported as Candida lusitaniae /C. duobushaemulonii. The proportion of correct identification was not statistically different across different centers (P = 0.78). Stratification by genetic clades demonstrated that 100% (n = 8) of the strains of the South American clade were correctly identified compared to 7% (n = 10) and 0% (n = 4) from the African and East Asian clades, respectively. None of the non-auris Candida strains (n = 9) were incorrectly identified as C. auris Our results show that the Vitek 2 (version 8.01) yeast identification system has a limited ability to correctly identify C. auris These data suggest that an identification result for C. duobushaemulonii should warrant further testing to rule out C. auris The overall performance of the Vitek 2 seems to differ according to C. auris genetic clade, with the South American isolates yielding the most accurate results.
Copyright © 2019 American Society for Microbiology.

Entities:  

Keywords:  Candida auris; VITEK 2; phenotypic identification

Mesh:

Year:  2019        PMID: 31413079      PMCID: PMC6812989          DOI: 10.1128/JCM.00884-19

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  28 in total

1.  Characterisation of the gene cluster for l-rhamnose catabolism in the yeast Scheffersomyces (Pichia) stipitis.

Authors:  Outi M Koivistoinen; Mikko Arvas; Jennifer R Headman; Martina Andberg; Merja Penttilä; Thomas W Jeffries; Peter Richard
Journal:  Gene       Date:  2011-10-21       Impact factor: 3.688

2.  Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses.

Authors:  Shawn R Lockhart; Kizee A Etienne; Snigdha Vallabhaneni; Joveria Farooqi; Anuradha Chowdhary; Nelesh P Govender; Arnaldo Lopes Colombo; Belinda Calvo; Christina A Cuomo; Christopher A Desjardins; Elizabeth L Berkow; Mariana Castanheira; Rindidzani E Magobo; Kauser Jabeen; Rana J Asghar; Jacques F Meis; Brendan Jackson; Tom Chiller; Anastasia P Litvintseva
Journal:  Clin Infect Dis       Date:  2016-10-20       Impact factor: 9.079

3.  Environmental Surfaces in Healthcare Facilities are a Potential Source for Transmission of Candida auris and Other Candida Species.

Authors:  Christina T Piedrahita; Jennifer L Cadnum; Annette L Jencson; Aaron A Shaikh; Mahmoud A Ghannoum; Curtis J Donskey
Journal:  Infect Control Hosp Epidemiol       Date:  2017-07-11       Impact factor: 3.254

4.  First three reported cases of nosocomial fungemia caused by Candida auris.

Authors:  Wee Gyo Lee; Jong Hee Shin; Young Uh; Min Gu Kang; Soo Hyun Kim; Kyung Hwa Park; Hee-Chang Jang
Journal:  J Clin Microbiol       Date:  2011-06-29       Impact factor: 5.948

5.  Comparison of EUCAST and CLSI Reference Microdilution MICs of Eight Antifungal Compounds for Candida auris and Associated Tentative Epidemiological Cutoff Values.

Authors:  M C Arendrup; Anupam Prakash; Joseph Meletiadis; Cheshta Sharma; Anuradha Chowdhary
Journal:  Antimicrob Agents Chemother       Date:  2017-05-24       Impact factor: 5.191

6.  A Candida auris Outbreak and Its Control in an Intensive Care Setting.

Authors:  David W Eyre; Anna E Sheppard; Hilary Madder; Ian Moir; Ruth Moroney; T Phuong Quan; David Griffiths; Sophie George; Lisa Butcher; Marcus Morgan; Robert Newnham; Mary Sunderland; Tiphanie Clarke; Dona Foster; Peter Hoffman; Andrew M Borman; Elizabeth M Johnson; Ginny Moore; Colin S Brown; A Sarah Walker; Tim E A Peto; Derrick W Crook; Katie J M Jeffery
Journal:  N Engl J Med       Date:  2018-10-04       Impact factor: 91.245

7.  Rapid and Accurate Molecular Identification of the Emerging Multidrug-Resistant Pathogen Candida auris.

Authors:  Milena Kordalewska; Yanan Zhao; Shawn R Lockhart; Anuradha Chowdhary; Indira Berrio; David S Perlin
Journal:  J Clin Microbiol       Date:  2017-05-24       Impact factor: 5.948

8.  Twenty Years of the SENTRY Antifungal Surveillance Program: Results for Candida Species From 1997-2016.

Authors:  Michael A Pfaller; Daniel J Diekema; John D Turnidge; Mariana Castanheira; Ronald N Jones
Journal:  Open Forum Infect Dis       Date:  2019-03-15       Impact factor: 3.835

9.  Epidemiology of candidemia in Latin America: a laboratory-based survey.

Authors:  Marcio Nucci; Flavio Queiroz-Telles; Tito Alvarado-Matute; Iris Nora Tiraboschi; Jorge Cortes; Jeannete Zurita; Manuel Guzman-Blanco; Maria Elena Santolaya; Luis Thompson; Jose Sifuentes-Osornio; Juan I Echevarria; Arnaldo L Colombo
Journal:  PLoS One       Date:  2013-03-19       Impact factor: 3.240

10.  In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR.

Authors:  Claire Khosravi; Roland Sándor Kun; Jaap Visser; María Victoria Aguilar-Pontes; Ronald P de Vries; Evy Battaglia
Journal:  BMC Microbiol       Date:  2017-11-06       Impact factor: 3.605

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  17 in total

1.  A study on vaginitis among pregnant and non-pregnant females in Alexandria, Egypt: An unexpected high rate of mixed vaginal infection.

Authors:  Sherine Mohamed Shawaky; Mariam Majed Ali Al Shammari; Manal Shafik Sewelliam; Abeer Abd El Rahim Ghazal; Ahmed Noby Amer
Journal:  AIMS Microbiol       Date:  2022-05-05

2.  Nail Changes in People Living with Human Immunodeficiency Virus: Observational and Cross-Sectional Study in a Third-Level Hospital.

Authors:  Luis R Flores-Bozo; Silvia Méndez-Flores; Valeria Olvera-Rodríguez; Josune Echevarría-Keel; Lilly Esquivel-Pedraza; Andrea Rangel-Cordero; Pablo F Belaunzarán-Zamudio; Judith G Domínguez-Cherit
Journal:  Skin Appendage Disord       Date:  2022-04-22

3.  Confirmation of fifth Candida auris clade by whole genome sequencing.

Authors:  Bram Spruijtenburg; Hamid Badali; Mahdi Abastabar; Hossein Mirhendi; Sadegh Khodavaisy; Joobin Sharifisooraki; Mojtaba Taghizadeh Armaki; Theun de Groot; Jacques F Meis
Journal:  Emerg Microbes Infect       Date:  2022-12       Impact factor: 19.568

4.  MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris.

Authors:  Ujwal R Bagal; John Phan; Rory M Welsh; Elizabeth Misas; Darlene Wagner; Lalitha Gade; Anastasia P Litvintseva; Christina A Cuomo; Nancy A Chow
Journal:  Methods Mol Biol       Date:  2022

5.  Isolation of Candida auris in Clinical Specimens.

Authors:  Anamika Yadav; Ashutosh Singh; Anuradha Chowdhary
Journal:  Methods Mol Biol       Date:  2022

Review 6.  Tools for Detecting a "Superbug": Updates on Candida auris Testing.

Authors:  Shawn R Lockhart; Meghan M Lyman; D Joseph Sexton
Journal:  J Clin Microbiol       Date:  2022-01-05       Impact factor: 11.677

7.  Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris.

Authors:  José F Muñoz; Rory M Welsh; Terrance Shea; Dhwani Batra; Lalitha Gade; Dakota Howard; Lori A Rowe; Jacques F Meis; Anastasia P Litvintseva; Christina A Cuomo
Journal:  Genetics       Date:  2021-05-17       Impact factor: 4.562

8.  External Quality Assessment Evaluating the Ability of Dutch Clinical Microbiological Laboratories to Identify Candida auris.

Authors:  Jochem B Buil; Henrich A L van der Lee; Ilse Curfs-Breuker; Paul E Verweij; Jacques F Meis
Journal:  J Fungi (Basel)       Date:  2019-10-07

9.  [Candida auris: estrategias y retos para prevenir un brote].

Authors:  Alejandra Zuluaga-Rodríguez
Journal:  Biomedica       Date:  2020-03-01       Impact factor: 0.935

10.  Identification of Cryptic Species of Four Candida Complexes in a Culture Collection.

Authors:  Gustavo Fontecha; Kathy Montes; Bryan Ortiz; Celeste Galindo; Sharleen Braham
Journal:  J Fungi (Basel)       Date:  2019-12-17
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