Literature DB >> 31411458

Conformational Control of Macrocycles by Remote Structural Modification.

Solomon D Appavoo1, Sungjoon Huh1, Diego B Diaz1, Andrei K Yudin1.   

Abstract

The conformational analysis of macrocycles is a complex and challenging problem. There are many factors that contribute to this complexity. These include a large number of degrees of freedom, transannular interactions such as hydrogen bonds and hydrophobic interactions, and a range of steric interactions, along with ring strain effects. To a greater extent than within acyclic molecules, these interactions within macrocycles are coupled such that changing one dihedral angle can significantly affect other dihedral angles, further complicating the situation. However, this coupling of bond rotations and transannular interactions enables the transmission of three-dimensional information from one side of a macrocycle to the other. Making relatively small structural modifications to a macrocycle can result in local conformational changes that propagate along the ring to affect distal structural features. The factors that control how such changes can propagate are poorly understood, and it is difficult to predict which modifications will result in significant conformational reorganizations of remote regions of a macrocycle. This review discusses examples where small structural modifications to macrocyclic scaffolds change the conformational preferences of structurally remote regions of the ring. We will highlight evidence provided for conformational changes triggered by remote substituents and explanations of how these changes might occur in an effort to further understand the factors that control such phenomena.

Entities:  

Year:  2019        PMID: 31411458     DOI: 10.1021/acs.chemrev.8b00742

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  12 in total

1.  Illuminating the dark conformational space of macrocycles using dominant rotors.

Authors:  Diego B Diaz; Solomon D Appavoo; Anastasia F Bogdanchikova; Yury Lebedev; Timothy J McTiernan; Gabriel Dos Passos Gomes; Andrei K Yudin
Journal:  Nat Chem       Date:  2021-02-15       Impact factor: 24.427

2.  High-Yielding Flow Synthesis of a Macrocyclic Molecular Hinge.

Authors:  Christopher D Jones; Laurence J Kershaw Cook; David Marquez-Gamez; Konstantin V Luzyanin; Jonathan W Steed; Anna G Slater
Journal:  J Am Chem Soc       Date:  2021-05-07       Impact factor: 15.419

3.  Macrocyclic Modalities Combining Peptide Epitopes and Natural Product Fragments.

Authors:  Stéphanie M Guéret; Sasikala Thavam; Rodrigo J Carbajo; Marco Potowski; Niklas Larsson; Göran Dahl; Anita Dellsén; Tom N Grossmann; Alleyn T Plowright; Eric Valeur; Malin Lemurell; Herbert Waldmann
Journal:  J Am Chem Soc       Date:  2020-03-02       Impact factor: 15.419

4.  SIME: synthetic insight-based macrolide enumerator to generate the V1B library of 1 billion macrolides.

Authors:  Phyo Phyo Kyaw Zin; Gavin Williams; Denis Fourches
Journal:  J Cheminform       Date:  2020-04-10       Impact factor: 5.514

5.  The role of NMR in leveraging dynamics and entropy in drug design.

Authors:  Abhinav Dubey; Koh Takeuchi; Mikhail Reibarkh; Haribabu Arthanari
Journal:  J Biomol NMR       Date:  2020-07-27       Impact factor: 2.835

6.  Evaluating the Viability of Successive Ring-Expansions Based on Amino Acid and Hydroxyacid Side-Chain Insertion.

Authors:  Aggie Lawer; Ryan G Epton; Thomas C Stephens; Kleopas Y Palate; Mahendar Lodi; Emilie Marotte; Katie J Lamb; Jade K Sangha; Jason M Lynam; William P Unsworth
Journal:  Chemistry       Date:  2020-09-11       Impact factor: 5.236

7.  Understanding Ring Puckering in Small Molecules and Cyclic Peptides.

Authors:  Lucian Chan; Geoffrey R Hutchison; Garrett M Morris
Journal:  J Chem Inf Model       Date:  2021-02-05       Impact factor: 4.956

Review 8.  Cyclic peptide drugs approved in the last two decades (2001-2021).

Authors:  Huiya Zhang; Shiyu Chen
Journal:  RSC Chem Biol       Date:  2021-11-05

9.  Macrocycle Cell Permeability Measured by Solvation Free Energies in Polar and Apolar Environments.

Authors:  Anna S Kamenik; Johannes Kraml; Florian Hofer; Franz Waibl; Patrick K Quoika; Ursula Kahler; Michael Schauperl; Klaus R Liedl
Journal:  J Chem Inf Model       Date:  2020-06-29       Impact factor: 6.162

10.  Conformational Heterogeneity and Self-Assembly of α,β,γ-Hybrid Peptides Containing Fenamic Acid: Multistimuli-Responsive Phase-Selective Gelation.

Authors:  Srayoshi Roy Chowdhury; Sujay Kumar Nandi; Debasish Podder; Debasish Haldar
Journal:  ACS Omega       Date:  2020-01-30
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