Literature DB >> 31406371

A split CRISPR-Cpf1 platform for inducible genome editing and gene activation.

Yuta Nihongaki1,2, Takahiro Otabe1, Yoshibumi Ueda1,3, Moritoshi Sato4,5.   

Abstract

The CRISPR-Cpf1 endonuclease has recently been demonstrated as a powerful tool to manipulate targeted gene sequences. Here, we performed an extensive screening of split Cpf1 fragments and identified a pair that, combined with inducible dimerization domains, enables chemical- and light-inducible genome editing in human cells. We also identified another split Cpf1 pair that is spontaneously activated. The newly generated amino and carboxyl termini of the spontaneously activated split Cpf1 can be repurposed as de novo fusion sites of artificial effector domains. Based on this finding, we generated an improved split dCpf1 activator, which has the potential to activate endogenous genes more efficiently than a previously established dCas9 activator. Finally, we showed that the split dCpf1 activator can efficiently activate target genes in mice. These results demonstrate that the present split Cpf1 provides an efficient and sophisticated genome manipulation in the fields of basic research and biotechnological applications.

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Year:  2019        PMID: 31406371     DOI: 10.1038/s41589-019-0338-y

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  1 in total

1.  Gene activation in human cells using CRISPR/Cpf1-p300 and CRISPR/Cpf1-SunTag systems.

Authors:  Xin Zhang; Wei Wang; Lin Shan; Le Han; Shufeng Ma; Yan Zhang; Bingtao Hao; Ying Lin; Zhili Rong
Journal:  Protein Cell       Date:  2018-04       Impact factor: 14.870

  1 in total
  13 in total

1.  A red light-responsive photoswitch for deep tissue optogenetics.

Authors:  Yuto Kuwasaki; Kazushi Suzuki; Gaigai Yu; Shota Yamamoto; Takahiro Otabe; Yuki Kakihara; Michiru Nishiwaki; Keita Miyake; Keiji Fushimi; Ramsey Bekdash; Yoshihiro Shimizu; Rei Narikawa; Takahiro Nakajima; Masayuki Yazawa; Moritoshi Sato
Journal:  Nat Biotechnol       Date:  2022-06-13       Impact factor: 54.908

2.  Optogenetic control of RNA function and metabolism using engineered light-switchable RNA-binding proteins.

Authors:  Renmei Liu; Jing Yang; Jing Yao; Zhou Zhao; Wei He; Ni Su; Zeyi Zhang; Chenxia Zhang; Zhuo Zhang; Haibo Cai; Linyong Zhu; Yuzheng Zhao; Shu Quan; Xianjun Chen; Yi Yang
Journal:  Nat Biotechnol       Date:  2022-01-03       Impact factor: 68.164

Review 3.  Steering Molecular Activity with Optogenetics: Recent Advances and Perspectives.

Authors:  Teak-Jung Oh; Huaxun Fan; Savanna S Skeeters; Kai Zhang
Journal:  Adv Biol (Weinh)       Date:  2021-01-14

Review 4.  Optogenetics: The Art of Illuminating Complex Signaling Pathways.

Authors:  Mark Shaaya; Jordan Fauser; Andrei V Karginov
Journal:  Physiology (Bethesda)       Date:  2021-01-01

Review 5.  External stimuli-responsive nanoparticles for spatially and temporally controlled delivery of CRISPR-Cas genome editors.

Authors:  Ruosen Xie; Yuyuan Wang; Shaoqin Gong
Journal:  Biomater Sci       Date:  2021-09-14       Impact factor: 7.590

6.  How should we regulate products of new breeding techniques? Opinion of surveyed experts in plant biotechnology.

Authors:  Rim Lassoued; Diego Maximiliano Macall; Stuart J Smyth; Peter W B Phillips; Hayley Hesseln
Journal:  Biotechnol Rep (Amst)       Date:  2020-05-05

7.  Toward a translationally independent RNA-based synthetic oscillator using deactivated CRISPR-Cas.

Authors:  James Kuo; Ruoshi Yuan; Carlos Sánchez; Johan Paulsson; Pamela A Silver
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

Review 8.  Epigenetic Control of a Local Chromatin Landscape.

Authors:  Anna M Chiarella; Dongbo Lu; Nathaniel A Hathaway
Journal:  Int J Mol Sci       Date:  2020-01-31       Impact factor: 5.923

Review 9.  Chemical and Light Inducible Epigenome Editing.

Authors:  Weiye Zhao; Yufan Wang; Fu-Sen Liang
Journal:  Int J Mol Sci       Date:  2020-02-03       Impact factor: 5.923

10.  PAM-less conditional DNA substrates leverage trans-cleavage of CRISPR-Cas12a for versatile live-cell biosensing.

Authors:  Siyu Chen; Rujia Wang; Shuang Peng; Shiyi Xie; Chunyang Lei; Yan Huang; Zhou Nie
Journal:  Chem Sci       Date:  2022-01-17       Impact factor: 9.825

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