Literature DB >> 31403778

Advancing Solutions to the Carbohydrate Sequencing Challenge.

Christopher J Gray1, Lukasz G Migas1, Perdita E Barran1, Kevin Pagel2, Peter H Seeberger3, Claire E Eyers4, Geert-Jan Boons5, Nicola L B Pohl6, Isabelle Compagnon7,8, Göran Widmalm9, Sabine L Flitsch1.   

Abstract

Carbohydrates possess a variety of distinct features with stereochemistry playing a particularly important role in distinguishing their structure and function. Monosaccharide building blocks are defined by a high density of chiral centers. Additionally, the anomericity and regiochemistry of the glycosidic linkages carry important biological information. Any carbohydrate-sequencing method needs to be precise in determining all aspects of this stereodiversity. Recently, several advances have been made in developing fast and precise analytical techniques that have the potential to address the stereochemical complexity of carbohydrates. This perspective seeks to provide an overview of some of these emerging techniques, focusing on those that are based on NMR and MS-hybridized technologies including ion mobility spectrometry and IR spectroscopy.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31403778      PMCID: PMC9397603          DOI: 10.1021/jacs.9b06406

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   16.383


  138 in total

1.  Distinctive characteristics of MALDI-Q/TOF and TOF/TOF tandem mass spectrometry for sequencing of permethylated complex type N-glycans.

Authors:  Shin-Yi Yu; Sz-Wei Wu; Kay-Hooi Khoo
Journal:  Glycoconj J       Date:  2006-07       Impact factor: 2.916

Review 2.  Mass spectrometric glycan rearrangements.

Authors:  Manfred Wuhrer; André M Deelder; Yuri E M van der Burgt
Journal:  Mass Spectrom Rev       Date:  2011-05-10       Impact factor: 10.946

3.  Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides.

Authors:  Jiandong Wu; Juan Wei; John D Hogan; Pradeep Chopra; Apoorva Joshi; Weigang Lu; Joshua Klein; Geert-Jan Boons; Cheng Lin; Joseph Zaia
Journal:  J Am Soc Mass Spectrom       Date:  2018-03-21       Impact factor: 3.109

4.  Direct evidence for the ring opening of monosaccharide anions in the gas phase: photodissociation of aldohexoses and aldohexoses derived from disaccharides using variable-wavelength infrared irradiation in the carbonyl stretch region.

Authors:  Darin J Brown; Sarah E Stefan; Giel Berden; Jeffrey D Steill; Jos Oomens; John R Eyler; Brad Bendiak
Journal:  Carbohydr Res       Date:  2011-06-22       Impact factor: 2.104

5.  The high mannose glycans from bovine ribonuclease B isomer characterization by ion trap MS.

Authors:  Justin M Prien; David J Ashline; Anthony J Lapadula; Hailong Zhang; Vernon N Reinhold
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-27       Impact factor: 3.109

6.  Derivatization of sialic acids for stabilization in matrix-assisted laser desorption/ionization mass spectrometry and concomitant differentiation of alpha(2 --> 3)- and alpha(2 --> 6)-isomers.

Authors:  Susan F Wheeler; Paula Domann; David J Harvey
Journal:  Rapid Commun Mass Spectrom       Date:  2009-01       Impact factor: 2.419

7.  NMR quantitation of natural products at the nanomole scale.

Authors:  Doralyn S Dalisay; Tadeusz F Molinski
Journal:  J Nat Prod       Date:  2009-04       Impact factor: 4.050

8.  A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 x 10(12) structures for a reducing hexasaccharide: the Isomer Barrier to development of single-method saccharide sequencing or synthesis systems.

Authors:  R A Laine
Journal:  Glycobiology       Date:  1994-12       Impact factor: 4.313

9.  Effective Assignment of α2,3/α2,6-Sialic Acid Isomers by LC-MS/MS-Based Glycoproteomics.

Authors:  Christian Pett; Waqas Nasir; Carina Sihlbom; Britt-Marie Olsson; Vanessa Caixeta; Manuel Schorlemer; René P Zahedi; Göran Larson; Jonas Nilsson; Ulrika Westerlind
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-20       Impact factor: 15.336

10.  EUROCarbDB: An open-access platform for glycoinformatics.

Authors:  Claus-Wilhelm von der Lieth; Ana Ardá Freire; Dennis Blank; Matthew P Campbell; Alessio Ceroni; David R Damerell; Anne Dell; Raymond A Dwek; Beat Ernst; Rasmus Fogh; Martin Frank; Hildegard Geyer; Rudolf Geyer; Mathew J Harrison; Kim Henrick; Stefan Herget; William E Hull; John Ionides; Hiren J Joshi; Johannis P Kamerling; Bas R Leeflang; Thomas Lütteke; Magnus Lundborg; Kai Maass; Anthony Merry; René Ranzinger; Jimmy Rosen; Louise Royle; Pauline M Rudd; Siegfried Schloissnig; Roland Stenutz; Wim F Vranken; Göran Widmalm; Stuart M Haslam
Journal:  Glycobiology       Date:  2010-11-23       Impact factor: 4.313

View more
  15 in total

1.  Linkage Memory in Underivatized Protonated Carbohydrates.

Authors:  Abhigya Mookherjee; Sanjit S Uppal; Taylor A Murphree; Miklos Guttman
Journal:  J Am Soc Mass Spectrom       Date:  2020-12-22       Impact factor: 3.109

Review 2.  Experimental and computational characterization of dynamic biomolecular interaction systems involving glycolipid glycans.

Authors:  Koichi Kato; Takumi Yamaguchi; Maho Yagi-Utsumi
Journal:  Glycoconj J       Date:  2022-03-17       Impact factor: 2.916

3.  Bioinformatics in Immunoglobulin Glycosylation Analysis.

Authors:  Frédérique Lisacek; Kathirvel Alagesan; Catherine Hayes; Steffen Lippold; Noortje de Haan
Journal:  Exp Suppl       Date:  2021

Review 4.  Mass Spectrometry-Based Techniques to Elucidate the Sugar Code.

Authors:  Márkó Grabarics; Maike Lettow; Carla Kirschbaum; Kim Greis; Christian Manz; Kevin Pagel
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

Review 5.  Characterization of Elusive Reaction Intermediates Using Infrared Ion Spectroscopy: Application to the Experimental Characterization of Glycosyl Cations.

Authors:  Floor Ter Braak; Hidde Elferink; Kas J Houthuijs; Jos Oomens; Jonathan Martens; Thomas J Boltje
Journal:  Acc Chem Res       Date:  2022-05-26       Impact factor: 24.466

Review 6.  Measuring change in glycoprotein structure.

Authors:  Mary Rachel Nalehua; Joseph Zaia
Journal:  Curr Opin Struct Biol       Date:  2022-04-19       Impact factor: 7.786

7.  Free-Radical-Mediated Glycan Isomer Differentiation.

Authors:  Rayan Murtada; Kimberly Fabijanczuk; Kaylee Gaspar; Xueming Dong; Kawthar Zeyad Alzarieni; Kimberly Calix; Edgar Manriquez; Rose Mery Bakestani; Hilkka I Kenttämaa; Jinshan Gao
Journal:  Anal Chem       Date:  2020-09-28       Impact factor: 6.986

8.  Differential recognition of oligomannose isomers by glycan-binding proteins involved in innate and adaptive immunity.

Authors:  Chao Gao; Kathrin Stavenhagen; Barbara Eckmair; Tanya R McKitrick; Akul Y Mehta; Yasuyuki Matsumoto; Alyssa M McQuillan; Melinda S Hanes; Deniz Eris; Kelly J Baker; Nan Jia; Mohui Wei; Jamie Heimburg-Molinaro; Beat Ernst; Richard D Cummings
Journal:  Sci Adv       Date:  2021-06-09       Impact factor: 14.136

9.  Glycan Compositions with GlyConnect Compozitor to Enhance Glycopeptide Identification.

Authors:  Julien Mariethoz; Catherine Hayes; Frédérique Lisacek
Journal:  Methods Mol Biol       Date:  2021

Review 10.  Understanding the mechanisms that facilitate specificity, not redundancy, of chemokine-mediated leukocyte recruitment.

Authors:  Douglas P Dyer
Journal:  Immunology       Date:  2020-05-06       Impact factor: 7.397

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.