Literature DB >> 31397556

Shifting the Hydrolysis Equilibrium of Substrate Loaded Acyl Carrier Proteins.

Terra Sztain1, Thomas G Bartholow1, J Andrew McCammon1,2, Michael D Burkart1.   

Abstract

Acyl carrier proteins (ACP)s transport intermediates through many primary and secondary metabolic pathways. Studying the effect of substrate identity on ACP structure has been hindered by the lability of the thioester bond that attaches acyl substrates to the 4'-phosphopantetheine cofactor of ACP. Here we show that an acyl acyl-carrier protein synthetase (AasS) can be used in real time to shift the hydrolysis equilibrium toward favoring acyl-ACP during solution NMR spectroscopy. Only 0.005 molar equivalents of AasS enables 1 week of stability to palmitoyl-AcpP from Escherichia coli. 2D NMR spectra enabled with this method revealed that the tethered palmitic acid perturbs nearly every secondary structural region of AcpP. This technique will allow previously unachievable structural studies of unstable acyl-ACP species, contributing to the understanding of these complex biosynthetic pathways.

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Year:  2019        PMID: 31397556      PMCID: PMC7605104          DOI: 10.1021/acs.biochem.9b00612

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

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Journal:  Proteomics       Date:  2006-01       Impact factor: 3.984

2.  Molecular dynamics simulations of the Apo-, Holo-, and acyl-forms of Escherichia coli acyl carrier protein.

Authors:  David I Chan; Thomas Stockner; D Peter Tieleman; Hans J Vogel
Journal:  J Biol Chem       Date:  2008-09-22       Impact factor: 5.157

3.  A nuclear magnetic resonance method for probing molecular influences of substrate loading in nonribosomal peptide synthetase carrier proteins.

Authors:  Andrew C Goodrich; Dominique P Frueh
Journal:  Biochemistry       Date:  2015-01-29       Impact factor: 3.162

4.  Modifying the Thioester Linkage Affects the Structure of the Acyl Carrier Protein.

Authors:  Terra Sztain; Ashay Patel; D John Lee; Tony D Davis; J Andrew McCammon; Michael D Burkart
Journal:  Angew Chem Int Ed Engl       Date:  2019-07-02       Impact factor: 15.336

5.  The soluble acyl-acyl carrier protein synthetase of Vibrio harveyi B392 is a member of the medium chain acyl-CoA synthetase family.

Authors:  Yanfang Jiang; Chi Ho Chan; John E Cronan
Journal:  Biochemistry       Date:  2006-08-22       Impact factor: 3.162

6.  Trapping the dynamic acyl carrier protein in fatty acid biosynthesis.

Authors:  Chi Nguyen; Robert W Haushalter; D John Lee; Phineus R L Markwick; Joel Bruegger; Grace Caldara-Festin; Kara Finzel; David R Jackson; Fumihiro Ishikawa; Bing O'Dowd; J Andrew McCammon; Stanley J Opella; Shiou-Chuan Tsai; Michael D Burkart
Journal:  Nature       Date:  2013-12-22       Impact factor: 49.962

7.  Versatility of acyl-acyl carrier protein synthetases.

Authors:  Joris Beld; Kara Finzel; Michael D Burkart
Journal:  Chem Biol       Date:  2014-10-09

8.  Structural studies of fatty acyl-(acyl carrier protein) thioesters reveal a hydrophobic binding cavity that can expand to fit longer substrates.

Authors:  Anna Roujeinikova; William J Simon; John Gilroy; David W Rice; John B Rafferty; Antoni R Slabas
Journal:  J Mol Biol       Date:  2006-09-23       Impact factor: 5.469

9.  The length of the bound fatty acid influences the dynamics of the acyl carrier protein and the stability of the thioester bond.

Authors:  Gregory A Zornetzer; Justinn Tanem; Brian G Fox; John L Markley
Journal:  Biochemistry       Date:  2010-01-26       Impact factor: 3.162

10.  Reversible labeling of native and fusion-protein motifs.

Authors:  Nicolas M Kosa; Robert W Haushalter; Andrew R Smith; Michael D Burkart
Journal:  Nat Methods       Date:  2012-09-16       Impact factor: 28.547

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  2 in total

1.  Decoding allosteric regulation by the acyl carrier protein.

Authors:  Terra Sztain; Thomas G Bartholow; D John Lee; Lorenzo Casalino; Andrew Mitchell; Megan A Young; Jianing Wang; J Andrew McCammon; Michael D Burkart
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

2.  Type I fatty acid synthase trapped in the octanoyl-bound state.

Authors:  Alexander Rittner; Karthik S Paithankar; Aaron Himmler; Martin Grininger
Journal:  Protein Sci       Date:  2020-02       Impact factor: 6.725

  2 in total

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