Literature DB >> 31396383

Visual Pattern-Driven Exploration of Big Data.

Michael Behrisch1, Tobias Schreck2, Robert Krüger1, Nils Gehlenborg3, Fritz Lekschas1, Hanspeter Pfister1.   

Abstract

Pattern extraction algorithms are enabling insights into the ever-growing amount of today's datasets by translating reoccurring data properties into compact representations. Yet, a practical problem arises: With increasing data volumes and complexity also the number of patterns increases, leaving the analyst with a vast result space. Current algorithmic and especially visualization approaches often fail to answer central overview questions essential for a comprehensive understanding of pattern distributions and support, their quality, and relevance to the analysis task. To address these challenges, we contribute a visual analytics pipeline targeted on the pattern-driven exploration of result spaces in a semi-automatic fashion. Specifically, we combine image feature analysis and unsupervised learning to partition the pattern space into interpretable, coherent chunks, which should be given priority in a subsequent in-depth analysis. In our analysis scenarios, no ground-truth is given. Thus, we employ and evaluate novel quality metrics derived from the distance distributions of our image feature vectors and the derived cluster model to guide the feature selection process. We visualize our results interactively, allowing the user to drill down from overview to detail into the pattern space and demonstrate our techniques in two case studies on Earth observation and biomedical genomic data.

Entities:  

Keywords:  Pattern Analysis; Pattern-Driven Exploration; Quality Metrics; User Guidance; Visual Analytics

Year:  2018        PMID: 31396383      PMCID: PMC6687327          DOI: 10.1109/BDVA.2018.8534028

Source DB:  PubMed          Journal:  2018 Int Symp Big Data Vis Immers Analyt (BDVA) (2018)


  26 in total

1.  Judging the quality of gene expression-based clustering methods using gene annotation.

Authors:  Francis D Gibbons; Frederick P Roth
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

2.  Pargnostics: screen-space metrics for parallel coordinates.

Authors:  Aritra Dasgupta; Robert Kosara
Journal:  IEEE Trans Vis Comput Graph       Date:  2010 Nov-Dec       Impact factor: 4.579

3.  Automated Analytical Methods to Support Visual Exploration of High-Dimensional Data.

Authors:  Andrada Tatu; Georgia Albuquerque; Martin Eisemann; Peter Bak; Holger Theisel; Marcus Magnor; Daniel Keim
Journal:  IEEE Trans Vis Comput Graph       Date:  2010-11-09       Impact factor: 4.579

4.  Value and relation display: interactive visual exploration of large data sets with hundreds of dimensions.

Authors:  Jing Yang; Daniel Hubball; Matthew O Ward; Elke A Rundensteiner; William Ribarsky
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 May-Jun       Impact factor: 4.579

Review 5.  Network analysis in the social sciences.

Authors:  Stephen P Borgatti; Ajay Mehra; Daniel J Brass; Giuseppe Labianca
Journal:  Science       Date:  2009-02-13       Impact factor: 47.728

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

Review 7.  Nuclear organization of the genome and the potential for gene regulation.

Authors:  Peter Fraser; Wendy Bickmore
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

8.  HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform.

Authors:  Hendrik Strobelt; Enrico Bertini; Joachim Braun; Oliver Deussen; Ulrich Groth; Thomas U Mayer; Dorit Merhof
Journal:  BMC Bioinformatics       Date:  2012-05-18       Impact factor: 3.169

9.  The Pathway Tools cellular overview diagram and Omics Viewer.

Authors:  Suzanne M Paley; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2006-08-07       Impact factor: 16.971

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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