Literature DB >> 31395755

Dynamic regulatory features of the protein tyrosine kinases.

Neha Amatya1, David Yin-Wei Lin1, Amy H Andreotti2.   

Abstract

The SRC, Abelson murine leukemia viral oncogene homolog 1, TEC and C-terminal SRC Kinase families of non-receptor tyrosine kinases (collectively the Src module kinases) mediate an array of cellular signaling processes and are therapeutic targets in many disease states. Crystal structures of Src modules kinases provide valuable insights into the regulatory mechanisms that control activation and generate a framework from which drug discovery can advance. The conformational ensembles visited by these multidomain kinases in solution are also key features of the regulatory machinery controlling catalytic activity. Measurement of dynamic motions within kinases substantially augments information derived from crystal structures. In this review, we focus on a body of work that has transformed our understanding of non-receptor tyrosine kinase regulation from a static view to one that incorporates how fluctuations in conformational ensembles and dynamic motions influence activation status. Regulatory dynamic networks are often shared across and between kinase families while specific dynamic behavior distinguishes unique regulatory mechanisms for select kinases. Moreover, intrinsically dynamic regions of kinases likely play important regulatory roles that have only been partially explored. Since there is clear precedence that kinase inhibitors can exploit specific dynamic features, continued efforts to define conformational ensembles and dynamic allostery will be key to combating drug resistance and devising alternate treatments for kinase-associated diseases.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  molecular conformations; protein dynamics; protein-tyrosine kinases; regulatory mechanisms

Mesh:

Substances:

Year:  2019        PMID: 31395755      PMCID: PMC7285797          DOI: 10.1042/BST20180590

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  121 in total

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Review 2.  The protein kinase complement of the human genome.

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Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

3.  Structure of the site phosphorylated in the phosphorylase b to a reaction.

Authors:  E H FISCHER; D J GRAVES; E R S CRITTENDEN; E G KREBS
Journal:  J Biol Chem       Date:  1959-07       Impact factor: 5.157

4.  SH3-SH2 domain orientation in Src kinases: NMR studies of Fyn.

Authors:  Tobias S Ulmer; Jörn M Werner; Iain D Campbell
Journal:  Structure       Date:  2002-07       Impact factor: 5.006

5.  Tyrosine Kinase Activation and Conformational Flexibility: Lessons from Src-Family Tyrosine Kinases.

Authors:  Yilin Meng; Matthew P Pond; Benoît Roux
Journal:  Acc Chem Res       Date:  2017-04-20       Impact factor: 22.384

6.  Transmembrane phosphoprotein Cbp regulates the activities of Src-family tyrosine kinases.

Authors:  M Kawabuchi; Y Satomi; T Takao; Y Shimonishi; S Nada; K Nagai; A Tarakhovsky; M Okada
Journal:  Nature       Date:  2000-04-27       Impact factor: 49.962

7.  Integration of signaling in the kinome: Architecture and regulation of the αC Helix.

Authors:  Susan S Taylor; Andrey S Shaw; Natarajan Kannan; Alexandr P Kornev
Journal:  Biochim Biophys Acta       Date:  2015-04-17

Review 8.  Evolution of a dynamic molecular switch.

Authors:  Susan S Taylor; Hiruy S Meharena; Alexandr P Kornev
Journal:  IUBMB Life       Date:  2019-05-06       Impact factor: 3.885

9.  c-Abl Tyrosine Kinase Adopts Multiple Active Conformational States in Solution.

Authors:  John Badger; Prerna Grover; Haibin Shi; Shoghag B Panjarian; John R Engen; Thomas E Smithgall; Lee Makowski
Journal:  Biochemistry       Date:  2016-06-03       Impact factor: 3.162

Review 10.  The Src module: an ancient scaffold in the evolution of cytoplasmic tyrosine kinases.

Authors:  Neel H Shah; Jeanine F Amacher; Laura M Nocka; John Kuriyan
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-09-05       Impact factor: 8.250

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Authors:  Sherry T Shu; Wing Fai Li; Thomas E Smithgall
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4.  Dynamic energy correlation analysis of E. coli aspartokinase III and alteration of allosteric regulation by manipulating energy transduction pathways.

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Journal:  Eng Life Sci       Date:  2021-03-02       Impact factor: 2.678

Review 5.  Fyn Signaling in Ischemia-Reperfusion Injury: Potential and Therapeutic Implications.

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Journal:  Mediators Inflamm       Date:  2022-09-15       Impact factor: 4.529

6.  Generic model for biological regulation.

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Journal:  F1000Res       Date:  2022-04-13

Review 7.  Bruton's Tyrosine Kinase Targeting in Multiple Myeloma.

Authors:  Max Von Suskil; Kazi Nasrin Sultana; Weam Othman Elbezanti; Omar S Al-Odat; Robert Chitren; Amit K Tiwari; Kishore B Challagundla; Sandeep Kumar Srivastava; Subash C Jonnalagadda; Tulin Budak-Alpdogan; Manoj K Pandey
Journal:  Int J Mol Sci       Date:  2021-05-27       Impact factor: 5.923

8.  ADAM15 expression is increased in lung CD8+ T cells, macrophages, and bronchial epithelial cells in patients with COPD and is inversely related to airflow obstruction.

Authors:  Xiaoyun Wang; Duo Zhang; Andrew Higham; Sophie Wolosianka; Xiaoyan Gai; Lu Zhou; Hans Petersen; Victor Pinto-Plata; Miguel Divo; Edwin K Silverman; Bartolome Celli; Dave Singh; Yongchang Sun; Caroline A Owen
Journal:  Respir Res       Date:  2020-07-16
  8 in total

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