| Literature DB >> 31392022 |
Ferdaousse Rhoufal1, Fouad Bentiss2, Salaheddine Guesmi1, El Mostafa Ketatni3, Mohamed Saadi4, Lahcen El Ammari4.
Abstract
The reaction of 2,5-bis-(pyridin-4-yl)-1,3,4-oxa-diazole (4-pox) and thio-cyanate ions, used as co-ligand with nickel salt NiCl2·6H2O, produced the title complex, [Ni(NCS)2(C12H8N4O)2(H2O)2]. The NiII atom is located on an inversion centre and is octa-hedrally coordinated by four N atoms from two ligands and two pseudohalide ions, forming the equatorial plane. The axial positions are occupied by two O atoms of coordinated water mol-ecules. In the crystal, the mol-ecules are linked into a three-dimensional network through strong O-H⋯N hydrogen bonds. Hirshfeld surface analysis was used to investigate the inter-molecular inter-actions in the crystal packing.Entities:
Keywords: 1,3,4-oxadiazole; Hirshfeld analysis; coordination complex; crystal structure; hydrogen bonds; spectroscopy; thiocyanate
Year: 2019 PMID: 31392022 PMCID: PMC6659318 DOI: 10.1107/S2056989019008727
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Symmetry code: (i) −x + 2, −y + 1, −z + 1.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H1 | 0.77 | 1.98 | 2.747 (2) | 172 |
| O2—H2 | 0.78 | 2.14 | 2.918 (3) | 173 |
Symmetry codes: (i) ; (ii) .
Figure 2Packing diagram of the title compound viewed approximately along the c axis. Hydrogen bonds (Table 1 ▸) are shown as dotted lines.
Figure 3A view of the Hirshfeld surface of the title compound mapped over d norm, showing the strong O—H⋯N hydrogen bonds (Table 1 ▸; dashed lines).
Figure 4The overall two-dimensional fingerprint plot for the title compound (a) and those delineated into (b) H⋯H (23.9%), (c) N⋯H/H⋯N (22.1%), (d) C⋯H/H⋯C (18.2%), (e) S⋯H/H⋯S (17.3%) and (f) C⋯C (5.9%) contacts.
Percentage contributions of intermolecular interactions to the Hirshfeld surface in [Ni(4-pox)2(NCS)2(H2O)2]
| Contact type | Percentage contribution |
|---|---|
| H⋯H | 23.9 |
| N⋯H/H⋯N | 22.1 |
| C⋯H/H⋯C | 18.2 |
| S⋯H/H⋯S | 17.3 |
| C⋯C | 5.9 |
| C⋯N/N⋯C | 3.7 |
| C⋯O/O⋯C | 2.9 |
| C⋯S/S⋯C | 2.5 |
| S⋯O/O⋯S | 1.4 |
| O⋯H/H⋯O | 0.7 |
| N⋯O/O⋯N | 0.7 |
| N⋯N | 0.5 |
Figure 5Hirshfeld surface of the title complex plotted over shape-index.
Figure 6Infrared spectra of the 4-pox ligand and the title complex in the 500–4000 cm−1 range.
IR data (cm−1) for the 4-pox ligand and the title complex [Ni(4-pox)2(NCS)2(H2O)2]
| Bond | 4-pox | [Ni(4-pox)2(NCS)2(H2O)2] |
|---|---|---|
|
| 1535–1414 ( | 1551–1418 ( |
|
| 1563 ( | 1569 ( |
|
| 1608 ( | 1618 ( |
|
| – | 2083 ( |
| C—H | 3040 ( | 3055 ( |
| O—H | – | 3409 ( |
w = weak, m = medium, s = strong.
Figure 7Electronic spectra of the 4-pox ligand and the title complex in methanol (10−4 M).
Experimental details
| Crystal data | |
| Chemical formula | [Ni(NCS)2(C12H8N4O)2(H2O)2] |
|
| 659.35 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 8.5395 (7), 20.7595 (15), 8.6686 (6) |
| β (°) | 108.908 (3) |
|
| 1453.81 (19) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.86 |
| Crystal size (mm) | 0.36 × 0.27 × 0.20 |
| Data collection | |
| Diffractometer | Bruker D8 VENTURE Super DUO |
| Absorption correction | Multi-scan ( |
|
| 0.638, 0.746 |
| No. of measured, independent and observed [ | 19935, 4425, 3100 |
|
| 0.041 |
| (sin θ/λ)max (Å−1) | 0.714 |
| Refinement | |
|
| 0.045, 0.123, 1.05 |
| No. of reflections | 4425 |
| No. of parameters | 197 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.69, −0.76 |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| [Ni(NCS)2(C12H8N4O)2(H2O)2] | |
| Monoclinic, | Mo |
| Cell parameters from 4425 reflections | |
| θ = 2.5–30.5° | |
| µ = 0.86 mm−1 | |
| β = 108.908 (3)° | |
| Block, green | |
| 0.36 × 0.27 × 0.20 mm |
| Bruker D8 VENTURE Super DUO diffractometer | 4425 independent reflections |
| Radiation source: INCOATEC IµS micro-focus source | 3100 reflections with |
| HELIOS mirror optics monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 30.5°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 19935 measured reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.69 e Å−3 | |
| 4425 reflections | Δρmin = −0.76 e Å−3 |
| 197 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.008 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.5151 (4) | 0.85637 (12) | 1.0739 (3) | 0.0652 (8) | |
| H1 | 0.560714 | 0.891631 | 1.037771 | 0.078* | |
| C2 | 0.5764 (4) | 0.79567 (10) | 1.0599 (3) | 0.0538 (6) | |
| H2 | 0.662391 | 0.790140 | 1.017334 | 0.065* | |
| C3 | 0.3276 (4) | 0.81602 (14) | 1.1842 (4) | 0.0680 (8) | |
| H3 | 0.242154 | 0.822966 | 1.226905 | 0.082* | |
| C4 | 0.3778 (3) | 0.75337 (12) | 1.1741 (3) | 0.0549 (6) | |
| H4 | 0.327416 | 0.719031 | 1.208419 | 0.066* | |
| C5 | 0.5052 (3) | 0.74335 (10) | 1.1116 (3) | 0.0446 (5) | |
| C6 | 0.5599 (3) | 0.67774 (9) | 1.0969 (3) | 0.0411 (5) | |
| C7 | 0.6815 (3) | 0.60294 (9) | 1.0151 (2) | 0.0370 (4) | |
| C8 | 0.7763 (3) | 0.57441 (9) | 0.9201 (3) | 0.0375 (4) | |
| C9 | 0.8891 (3) | 0.61127 (10) | 0.8754 (3) | 0.0484 (6) | |
| H9 | 0.916670 | 0.652504 | 0.917307 | 0.058* | |
| C10 | 0.9594 (3) | 0.58558 (10) | 0.7675 (3) | 0.0516 (6) | |
| H10 | 1.035155 | 0.610562 | 0.737470 | 0.062* | |
| C11 | 0.7456 (3) | 0.51207 (9) | 0.8619 (3) | 0.0449 (5) | |
| H11 | 0.674855 | 0.485395 | 0.894781 | 0.054* | |
| C12 | 0.8219 (3) | 0.49036 (9) | 0.7543 (3) | 0.0472 (6) | |
| H12 | 0.800741 | 0.448454 | 0.715141 | 0.057* | |
| C13 | 0.9838 (3) | 0.64445 (9) | 0.3751 (3) | 0.0399 (5) | |
| N1 | 0.3940 (3) | 0.86677 (11) | 1.1365 (3) | 0.0707 (7) | |
| N2 | 0.5248 (3) | 0.62564 (9) | 1.1590 (3) | 0.0516 (5) | |
| N3 | 0.6058 (3) | 0.57608 (8) | 1.1044 (2) | 0.0478 (5) | |
| N4 | 0.9250 (3) | 0.52657 (8) | 0.7032 (2) | 0.0454 (5) | |
| N5 | 0.9805 (3) | 0.59299 (8) | 0.4230 (3) | 0.0478 (5) | |
| O1 | 0.65795 (19) | 0.66746 (6) | 1.00419 (17) | 0.0398 (3) | |
| O2 | 0.7528 (2) | 0.48479 (7) | 0.3675 (2) | 0.0575 (5) | |
| H1W | 0.703394 | 0.453575 | 0.366441 | 0.086* | |
| H2W | 0.708961 | 0.506891 | 0.292497 | 0.086* | |
| S2 | 0.99004 (12) | 0.71645 (3) | 0.30546 (12) | 0.0874 (3) | |
| Ni1 | 1.000000 | 0.500000 | 0.500000 | 0.03858 (14) |
| C1 | 0.084 (2) | 0.0360 (11) | 0.0605 (15) | 0.0122 (12) | 0.0024 (15) | −0.0055 (10) |
| C2 | 0.0703 (18) | 0.0367 (10) | 0.0498 (13) | 0.0101 (11) | 0.0131 (13) | −0.0037 (9) |
| C3 | 0.0566 (18) | 0.0648 (17) | 0.0704 (18) | 0.0273 (14) | 0.0038 (15) | −0.0176 (14) |
| C4 | 0.0494 (16) | 0.0541 (13) | 0.0537 (14) | 0.0183 (11) | 0.0063 (12) | −0.0082 (11) |
| C5 | 0.0505 (15) | 0.0377 (10) | 0.0386 (10) | 0.0136 (9) | 0.0047 (10) | −0.0048 (8) |
| C6 | 0.0467 (13) | 0.0361 (10) | 0.0389 (10) | 0.0080 (9) | 0.0116 (10) | −0.0038 (8) |
| C7 | 0.0407 (12) | 0.0277 (8) | 0.0410 (10) | 0.0029 (7) | 0.0112 (9) | 0.0004 (7) |
| C8 | 0.0404 (12) | 0.0301 (9) | 0.0432 (10) | 0.0021 (8) | 0.0151 (10) | 0.0000 (7) |
| C9 | 0.0549 (15) | 0.0342 (9) | 0.0616 (14) | −0.0117 (9) | 0.0265 (13) | −0.0127 (9) |
| C10 | 0.0563 (16) | 0.0392 (10) | 0.0696 (15) | −0.0159 (10) | 0.0346 (14) | −0.0113 (10) |
| C11 | 0.0537 (15) | 0.0299 (9) | 0.0595 (13) | −0.0042 (8) | 0.0301 (12) | −0.0016 (8) |
| C12 | 0.0586 (16) | 0.0287 (9) | 0.0636 (14) | −0.0066 (9) | 0.0325 (13) | −0.0062 (8) |
| C13 | 0.0403 (13) | 0.0310 (9) | 0.0456 (11) | −0.0011 (8) | 0.0099 (10) | −0.0038 (8) |
| N1 | 0.0738 (18) | 0.0484 (12) | 0.0680 (14) | 0.0283 (11) | −0.0071 (13) | −0.0148 (10) |
| N2 | 0.0647 (14) | 0.0390 (9) | 0.0609 (12) | 0.0099 (9) | 0.0340 (11) | 0.0009 (8) |
| N3 | 0.0609 (14) | 0.0330 (8) | 0.0583 (11) | 0.0063 (8) | 0.0317 (11) | 0.0018 (7) |
| N4 | 0.0526 (12) | 0.0312 (8) | 0.0620 (12) | −0.0059 (8) | 0.0320 (10) | −0.0062 (8) |
| N5 | 0.0527 (13) | 0.0311 (8) | 0.0629 (12) | −0.0026 (7) | 0.0234 (10) | −0.0001 (8) |
| O1 | 0.0500 (10) | 0.0278 (6) | 0.0421 (8) | 0.0035 (6) | 0.0159 (7) | −0.0007 (5) |
| O2 | 0.0481 (11) | 0.0392 (8) | 0.0786 (12) | −0.0102 (7) | 0.0116 (9) | 0.0160 (8) |
| S2 | 0.0959 (7) | 0.0375 (3) | 0.0972 (6) | −0.0107 (3) | −0.0123 (5) | 0.0245 (3) |
| Ni1 | 0.0423 (3) | 0.02354 (17) | 0.0559 (3) | −0.00321 (14) | 0.0241 (2) | −0.00040 (14) |
| C1—N1 | 1.332 (4) | C8—C11 | 1.383 (3) |
| C1—C2 | 1.385 (3) | C9—C10 | 1.372 (3) |
| C1—H1 | 0.9300 | C9—H9 | 0.9300 |
| C2—C5 | 1.388 (3) | C10—N4 | 1.338 (3) |
| C2—H2 | 0.9300 | C10—H10 | 0.9300 |
| C3—N1 | 1.325 (4) | C11—C12 | 1.375 (3) |
| C3—C4 | 1.381 (3) | C11—H11 | 0.9300 |
| C3—H3 | 0.9300 | C12—N4 | 1.338 (3) |
| C4—C5 | 1.379 (3) | C12—H12 | 0.9300 |
| C4—H4 | 0.9300 | C13—N5 | 1.150 (3) |
| C5—C6 | 1.459 (3) | C13—S2 | 1.619 (2) |
| C6—N2 | 1.286 (3) | N2—N3 | 1.404 (2) |
| C6—O1 | 1.352 (3) | N4—Ni1 | 2.1327 (17) |
| C7—N3 | 1.285 (3) | N5—Ni1 | 2.0316 (18) |
| C7—O1 | 1.353 (2) | O2—Ni1 | 2.0748 (18) |
| C7—C8 | 1.456 (3) | O2—H1W | 0.7715 |
| C8—C9 | 1.380 (3) | O2—H2W | 0.7846 |
| N1—C1—C2 | 123.3 (3) | C8—C11—H11 | 120.7 |
| N1—C1—H1 | 118.4 | N4—C12—C11 | 123.21 (18) |
| C2—C1—H1 | 118.4 | N4—C12—H12 | 118.4 |
| C1—C2—C5 | 117.8 (3) | C11—C12—H12 | 118.4 |
| C1—C2—H2 | 121.1 | N5—C13—S2 | 179.0 (2) |
| C5—C2—H2 | 121.1 | C3—N1—C1 | 117.8 (2) |
| N1—C3—C4 | 123.8 (3) | C6—N2—N3 | 105.56 (17) |
| N1—C3—H3 | 118.1 | C7—N3—N2 | 106.48 (16) |
| C4—C3—H3 | 118.1 | C12—N4—C10 | 117.08 (18) |
| C5—C4—C3 | 117.9 (3) | C12—N4—Ni1 | 122.28 (14) |
| C5—C4—H4 | 121.1 | C10—N4—Ni1 | 119.80 (14) |
| C3—C4—H4 | 121.1 | C13—N5—Ni1 | 172.93 (19) |
| C4—C5—C2 | 119.5 (2) | C6—O1—C7 | 102.77 (15) |
| C4—C5—C6 | 119.4 (2) | Ni1—O2—H1W | 126.0 |
| C2—C5—C6 | 121.1 (2) | Ni1—O2—H2W | 119.7 |
| N2—C6—O1 | 112.89 (17) | H1W—O2—H2W | 111.7 |
| N2—C6—C5 | 128.6 (2) | N5i—Ni1—N5 | 180.0 |
| O1—C6—C5 | 118.47 (19) | N5i—Ni1—O2i | 90.13 (7) |
| N3—C7—O1 | 112.30 (17) | N5—Ni1—O2i | 89.87 (7) |
| N3—C7—C8 | 130.17 (17) | N5i—Ni1—O2 | 89.87 (7) |
| O1—C7—C8 | 117.41 (17) | N5—Ni1—O2 | 90.13 (7) |
| C9—C8—C11 | 118.93 (19) | O2i—Ni1—O2 | 180.00 (8) |
| C9—C8—C7 | 120.01 (17) | N5i—Ni1—N4 | 89.38 (7) |
| C11—C8—C7 | 120.85 (19) | N5—Ni1—N4 | 90.62 (7) |
| C10—C9—C8 | 118.35 (19) | O2i—Ni1—N4 | 91.57 (8) |
| C10—C9—H9 | 120.8 | O2—Ni1—N4 | 88.43 (8) |
| C8—C9—H9 | 120.8 | N5i—Ni1—N4i | 90.62 (7) |
| N4—C10—C9 | 123.7 (2) | N5—Ni1—N4i | 89.38 (7) |
| N4—C10—H10 | 118.2 | O2i—Ni1—N4i | 88.43 (8) |
| C9—C10—H10 | 118.2 | O2—Ni1—N4i | 91.57 (8) |
| C12—C11—C8 | 118.60 (19) | N4—Ni1—N4i | 180.0 |
| C12—C11—H11 | 120.7 |
| H··· | ||||
| O2—H1 | 0.77 | 1.98 | 2.747 (2) | 172 |
| O2—H2 | 0.78 | 2.14 | 2.918 (3) | 173 |