| Literature DB >> 31392004 |
Soufiane Akhramez1, Abderrafia Hafid1, Mostafa Khouili1, Mohamed Saadi2, Lahcen El Ammari2, El Mostafa Ketatni1.
Abstract
A new quinoline-based hydrazone, C16H12ClN3, was synthesized by a condensation reaction of 2-chloro-3-formyl-quinoline with phenyl-hydrazine. The quinoline ring system is essentially planar (r.m.s. deviation = 0.012 Å), and forms a dihedral angle of 8.46 (10)° with the phenyl ring. The mol-ecule adopts an E configuration with respect to the central C=N bond. In the crystal, mol-ecules are linked by a C-H⋯π-phenyl inter-action, forming zigzag chains propagating along the [10] direction. The N-H hydrogen atom does not participate in hydrogen bonding but is directed towards the phenyl ring of an adjacent mol-ecule, so linking the chains via weak N-H⋯π inter-actions to form of a three-dimensional structure. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (35.5%), C⋯H/H⋯C (33.7%), Cl⋯H/H⋯Cl (12.3%), N⋯H/H⋯N (9.5%) contacts.Entities:
Keywords: C—H⋯π interaction; Hirshfeld surface analysis; crystal structure; phenyl hydrazine; quinoline hydrazine; weak N—H⋯π interaction
Year: 2019 PMID: 31392004 PMCID: PMC6659329 DOI: 10.1107/S2056989019007692
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Reaction scheme: condensation of 2-chloro-3-formylquinoline with phenylhydrazine.
Figure 2The molecular structure of compound 5 with the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C11–C16 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C7—H7⋯ | 0.93 | 2.97 | 3.700 (3) | 136 |
| N3—H3 | 0.86 | 3.30 | 4.060 | 149 |
Symmetry codes: (i) ; (ii) .
Figure 3Chain of molecules of compound 5 linked by C—H⋯π and N—H⋯π interactions (Table 1 ▸), shown respectively, as dotted orange and purple dashed lines. For clarity, H atoms not involved in these interactions have been omitted.
Figure 4A view along the c axis of the crystal packing of compound 5. H atoms not involved in the C—H⋯π and N—H⋯π interactions (dotted orange and purple dashed lines, respectively) have been omitted for clarity.
Figure 5A view of the Hirshfeld surface of compound 5 mapped over (a) d norm and (b) shape index.
Figure 6The overall two-dimensional fingerprint plot for compound 5, and those delineated into: (b) H⋯H (35.5%), (c) C⋯H/H⋯C (33.7%), (d) Cl⋯H/H.·Cl (12.3%) and (e) N⋯H/H⋯N (9.5%) contacts.
Figure 7Structures of some related quinoline-hydrazine compounds.
Comparison of main bond lengths (Å) and C—C=N—N torsion angles (°) in compound 5 and the related structures 5a, 5b and 5c
| Compound | C2—C10 | C10=N2 | N2—N3 | N3—C11 | C—C=N—N |
|---|---|---|---|---|---|
|
| 1.461 (3) | 1.277 (3) | 1.349 (3) | 1.391 (3) | −177.79 (19) |
|
| 1.468 | 1.282 | 1.354 | 1.400 | −178.40 |
|
| 1.452 | 1.289 | 1.350 | 1.393 | −179.10 |
|
| 1.456 | 1.279 | 1.348 | 1.389 | 179.10 |
Notes: 5 this study; 5a Kumara et al. (2016 ▸); 5b Mukherjee et al. (2014 ▸); 5c Chaur Valencia et al. (2018 ▸).
Experimental details
| Crystal data | |
| Chemical formula | C16H12ClN3 |
|
| 281.74 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 6.2114 (4), 19.4553 (11), 11.2520 (7) |
| β (°) | 91.883 (2) |
|
| 1359.01 (14) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.27 |
| Crystal size (mm) | 0.35 × 0.26 × 0.20 |
| Data collection | |
| Diffractometer | Bruker D8 VENTURE Super DUO |
| Absorption correction | Multi-scan ( |
|
| 0.678, 0.746 |
| No. of measured, independent and observed [ | 21613, 2981, 2712 |
|
| 0.029 |
| (sin θ/λ)max (Å−1) | 0.641 |
| Refinement | |
|
| 0.029, 0.072, 1.04 |
| No. of reflections | 2981 |
| No. of parameters | 182 |
| No. of restraints | 2 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.15, −0.14 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.023 (15) |
Computer programs: APEX3 and SAINT-Plus (Bruker, 2016 ▸), SHELXS2014 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C16H12ClN3 | |
| Monoclinic, | Mo |
| Cell parameters from 2981 reflections | |
| θ = 2.8–27.1° | |
| µ = 0.27 mm−1 | |
| β = 91.883 (2)° | |
| Block, brown | |
| 0.35 × 0.26 × 0.20 mm |
| Bruker D8 VENTURE Super DUO diffractometer | 2981 independent reflections |
| Radiation source: INCOATEC IµS micro-focus source | 2712 reflections with |
| HELIOS mirror optics monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 27.1°, θmin = 2.8° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2016) | |
| 21613 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.15 e Å−3 | |
| 2981 reflections | Δρmin = −0.14 e Å−3 |
| 182 parameters | Extinction correction: (SHELXL2014; Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 2 restraints | Extinction coefficient: 0.0046 (13) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack |
| Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.023 (15) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.50087 (11) | 0.42496 (3) | 0.50091 (7) | 0.0554 (2) | |
| N1 | 0.1727 (3) | 0.34866 (11) | 0.44617 (16) | 0.0421 (4) | |
| N2 | 0.6213 (3) | 0.40817 (9) | 0.12487 (17) | 0.0419 (4) | |
| N3 | 0.8016 (3) | 0.43842 (10) | 0.08642 (18) | 0.0463 (5) | |
| H3N | 0.8814 | 0.4624 | 0.1345 | 0.056* | |
| C1 | 0.3350 (3) | 0.37935 (11) | 0.39999 (19) | 0.0393 (5) | |
| C2 | 0.3882 (3) | 0.37981 (11) | 0.27845 (18) | 0.0371 (5) | |
| C3 | 0.2499 (4) | 0.34346 (12) | 0.20400 (18) | 0.0395 (5) | |
| H3 | 0.2744 | 0.3424 | 0.1229 | 0.047* | |
| C4 | 0.0728 (4) | 0.30794 (11) | 0.24785 (18) | 0.0379 (5) | |
| C5 | −0.0709 (4) | 0.26905 (12) | 0.1754 (2) | 0.0470 (5) | |
| H5 | −0.0510 | 0.2665 | 0.0940 | 0.056* | |
| C6 | −0.2389 (4) | 0.23516 (13) | 0.2241 (2) | 0.0511 (6) | |
| H6 | −0.3328 | 0.2096 | 0.1756 | 0.061* | |
| C7 | −0.2712 (5) | 0.23870 (13) | 0.3473 (3) | 0.0544 (6) | |
| H7 | −0.3850 | 0.2149 | 0.3798 | 0.065* | |
| C8 | −0.1374 (4) | 0.27659 (13) | 0.4190 (2) | 0.0498 (6) | |
| H8 | −0.1619 | 0.2794 | 0.4999 | 0.060* | |
| C9 | 0.0384 (4) | 0.31169 (11) | 0.37146 (19) | 0.0394 (5) | |
| C10 | 0.5788 (4) | 0.41442 (11) | 0.2346 (2) | 0.0421 (5) | |
| H10 | 0.6671 | 0.4404 | 0.2855 | 0.051* | |
| C11 | 0.8577 (4) | 0.43052 (11) | −0.0315 (2) | 0.0405 (5) | |
| C12 | 0.7277 (4) | 0.39628 (13) | −0.1134 (2) | 0.0487 (5) | |
| H12 | 0.5980 | 0.3773 | −0.0905 | 0.058* | |
| C13 | 0.7903 (5) | 0.39014 (15) | −0.2298 (2) | 0.0574 (7) | |
| H13 | 0.7017 | 0.3670 | −0.2847 | 0.069* | |
| C14 | 0.9814 (5) | 0.41769 (13) | −0.2655 (2) | 0.0582 (7) | |
| H14 | 1.0218 | 0.4137 | −0.3441 | 0.070* | |
| C15 | 1.1114 (5) | 0.45108 (15) | −0.1835 (3) | 0.0620 (7) | |
| H15 | 1.2414 | 0.4697 | −0.2067 | 0.074* | |
| C16 | 1.0518 (5) | 0.45757 (15) | −0.0663 (2) | 0.0563 (7) | |
| H16 | 1.1420 | 0.4800 | −0.0113 | 0.068* |
| Cl1 | 0.0558 (3) | 0.0700 (4) | 0.0398 (3) | −0.0078 (3) | −0.0075 (2) | −0.0099 (3) |
| N1 | 0.0487 (10) | 0.0489 (10) | 0.0288 (8) | −0.0018 (8) | 0.0014 (8) | −0.0004 (7) |
| N2 | 0.0435 (11) | 0.0417 (10) | 0.0407 (10) | −0.0026 (8) | 0.0042 (8) | 0.0034 (8) |
| N3 | 0.0471 (11) | 0.0510 (11) | 0.0411 (10) | −0.0138 (9) | 0.0049 (8) | −0.0024 (8) |
| C1 | 0.0438 (12) | 0.0401 (11) | 0.0336 (10) | 0.0036 (9) | −0.0052 (9) | −0.0029 (9) |
| C2 | 0.0416 (12) | 0.0352 (11) | 0.0345 (11) | 0.0044 (9) | 0.0015 (9) | 0.0009 (8) |
| C3 | 0.0474 (12) | 0.0425 (12) | 0.0290 (10) | 0.0001 (9) | 0.0052 (9) | −0.0021 (8) |
| C4 | 0.0453 (12) | 0.0349 (10) | 0.0335 (10) | 0.0029 (9) | 0.0025 (9) | 0.0002 (8) |
| C5 | 0.0574 (14) | 0.0469 (12) | 0.0368 (12) | −0.0040 (11) | 0.0024 (10) | −0.0047 (10) |
| C6 | 0.0566 (14) | 0.0465 (14) | 0.0499 (15) | −0.0112 (11) | −0.0021 (12) | −0.0065 (10) |
| C7 | 0.0541 (15) | 0.0536 (14) | 0.0561 (15) | −0.0123 (12) | 0.0110 (12) | 0.0013 (12) |
| C8 | 0.0575 (15) | 0.0561 (15) | 0.0361 (12) | −0.0054 (12) | 0.0092 (10) | 0.0025 (11) |
| C9 | 0.0459 (12) | 0.0379 (11) | 0.0343 (10) | 0.0020 (9) | 0.0016 (9) | 0.0016 (8) |
| C10 | 0.0452 (12) | 0.0426 (11) | 0.0385 (11) | −0.0024 (10) | 0.0011 (9) | −0.0009 (9) |
| C11 | 0.0454 (12) | 0.0364 (12) | 0.0401 (12) | −0.0003 (9) | 0.0050 (9) | 0.0038 (8) |
| C12 | 0.0464 (13) | 0.0539 (13) | 0.0457 (13) | −0.0040 (11) | −0.0004 (10) | 0.0031 (10) |
| C13 | 0.0755 (19) | 0.0575 (16) | 0.0388 (13) | 0.0056 (14) | −0.0042 (12) | 0.0008 (11) |
| C14 | 0.084 (2) | 0.0474 (14) | 0.0441 (13) | 0.0173 (14) | 0.0182 (13) | 0.0101 (11) |
| C15 | 0.0650 (18) | 0.0549 (15) | 0.0677 (18) | −0.0024 (13) | 0.0277 (15) | 0.0071 (13) |
| C16 | 0.0563 (15) | 0.0560 (15) | 0.0572 (16) | −0.0156 (12) | 0.0113 (12) | −0.0022 (12) |
| Cl1—C1 | 1.750 (2) | C6—H6 | 0.9300 |
| N1—C1 | 1.295 (3) | C7—C8 | 1.356 (4) |
| N1—C9 | 1.369 (3) | C7—H7 | 0.9300 |
| N2—C10 | 1.277 (3) | C8—C9 | 1.408 (3) |
| N2—N3 | 1.349 (3) | C8—H8 | 0.9300 |
| N3—C11 | 1.391 (3) | C10—H10 | 0.9300 |
| N3—H3N | 0.8600 | C11—C12 | 1.377 (3) |
| C1—C2 | 1.417 (3) | C11—C16 | 1.384 (3) |
| C2—C3 | 1.376 (3) | C12—C13 | 1.384 (3) |
| C2—C10 | 1.461 (3) | C12—H12 | 0.9300 |
| C3—C4 | 1.402 (3) | C13—C14 | 1.374 (4) |
| C3—H3 | 0.9300 | C13—H13 | 0.9300 |
| C4—C5 | 1.409 (3) | C14—C15 | 1.370 (5) |
| C4—C9 | 1.416 (3) | C14—H14 | 0.9300 |
| C5—C6 | 1.365 (4) | C15—C16 | 1.387 (4) |
| C5—H5 | 0.9300 | C15—H15 | 0.9300 |
| C6—C7 | 1.409 (4) | C16—H16 | 0.9300 |
| C1—N1—C9 | 117.55 (18) | C7—C8—H8 | 119.8 |
| C10—N2—N3 | 117.97 (19) | C9—C8—H8 | 119.8 |
| N2—N3—C11 | 119.62 (19) | N1—C9—C8 | 119.1 (2) |
| N2—N3—H3N | 120.2 | N1—C9—C4 | 121.43 (19) |
| C11—N3—H3N | 120.2 | C8—C9—C4 | 119.5 (2) |
| N1—C1—C2 | 126.8 (2) | N2—C10—C2 | 118.6 (2) |
| N1—C1—Cl1 | 115.01 (16) | N2—C10—H10 | 120.7 |
| C2—C1—Cl1 | 118.15 (17) | C2—C10—H10 | 120.7 |
| C3—C2—C1 | 115.04 (19) | C12—C11—C16 | 119.4 (2) |
| C3—C2—C10 | 121.86 (19) | C12—C11—N3 | 122.1 (2) |
| C1—C2—C10 | 123.08 (19) | C16—C11—N3 | 118.4 (2) |
| C2—C3—C4 | 121.36 (19) | C11—C12—C13 | 119.9 (2) |
| C2—C3—H3 | 119.3 | C11—C12—H12 | 120.0 |
| C4—C3—H3 | 119.3 | C13—C12—H12 | 120.0 |
| C3—C4—C5 | 123.4 (2) | C14—C13—C12 | 121.0 (3) |
| C3—C4—C9 | 117.76 (19) | C14—C13—H13 | 119.5 |
| C5—C4—C9 | 118.9 (2) | C12—C13—H13 | 119.5 |
| C6—C5—C4 | 120.4 (2) | C15—C14—C13 | 118.9 (2) |
| C6—C5—H5 | 119.8 | C15—C14—H14 | 120.5 |
| C4—C5—H5 | 119.8 | C13—C14—H14 | 120.5 |
| C5—C6—C7 | 120.4 (2) | C14—C15—C16 | 120.9 (3) |
| C5—C6—H6 | 119.8 | C14—C15—H15 | 119.5 |
| C7—C6—H6 | 119.8 | C16—C15—H15 | 119.5 |
| C8—C7—C6 | 120.5 (2) | C11—C16—C15 | 119.8 (3) |
| C8—C7—H7 | 119.8 | C11—C16—H16 | 120.1 |
| C6—C7—H7 | 119.8 | C15—C16—H16 | 120.1 |
| C7—C8—C9 | 120.4 (2) |
| H··· | ||||
| C7—H7··· | 0.93 | 2.97 | 3.700 (3) | 136 |
| N3—H3 | 0.86 | 3.30 | 4.060 | 149 |