| Literature DB >> 31391995 |
Dohyun Moon1, Sunghwan Jeon2, Keon Sang Ryoo2, Jong-Ha Choi2.
Abstract
The crystal structure of title salt,Entities:
Keywords: crystal structure; hydrate; hydrogen bonds; nitrate; protonated macrocycle; synchrotron radiation
Year: 2019 PMID: 31391995 PMCID: PMC6658972 DOI: 10.1107/S2056989019007655
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), drawn with displacement ellipsoids at the 30% probability level. Primed atoms are related by the symmetry code (1 − x, 1 − y, 1 − z). Dashed lines represent N—H⋯O (cyan), N—H⋯N (pink) and O—H⋯O (blue) hydrogen-bonding interactions, respectively.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.90 | 2.40 | 2.9703 (18) | 121 |
| N2—H2 | 0.90 | 2.41 | 2.8141 (17) | 107 |
| N1—H1 | 0.94 | 1.84 | 2.7493 (19) | 163 |
| N2—H2 | 0.90 | 2.40 | 2.9703 (18) | 121 |
| N2—H2 | 0.90 | 2.27 | 3.031 (2) | 142 |
| O4—H1 | 0.94 (1) | 2.57 (2) | 3.169 (3) | 122 (2) |
| O4—H1 | 0.94 (1) | 1.84 (1) | 2.768 (2) | 174 (2) |
| O4—H2 | 0.94 (1) | 2.04 (1) | 2.914 (2) | 155 (2) |
| O4—H2 | 0.94 (1) | 2.31 (2) | 3.120 (4) | 144 (2) |
Symmetry codes: (i) ; (ii) .
Figure 2The crystal packing in (I), viewed perpendicular to the bc plane. Dashed lines represent N—H⋯O (cyan), N—H⋯N (pink) and O—H⋯O (blue) hydrogen bonding interactions, respectively. H atoms bound to C have been omitted.
Experimental details
| Crystal data | |
| Chemical formula | C22H46N4 2+·2NO3 −·2H2O |
|
| 526.68 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 220 |
|
| 8.6420 (17), 16.687 (3), 9.7340 (19) |
| β (°) | 96.46 (3) |
|
| 1394.8 (5) |
|
| 2 |
| Radiation type | Synchrotron, λ = 0.610 Å |
| μ (mm−1) | 0.07 |
| Crystal size (mm) | 0.13 × 0.09 × 0.05 |
| Data collection | |
| Diffractometer | Rayonix MX225HS CCD area detector |
| Absorption correction | Empirical (using intensity measurements) ( |
|
| 0.919, 1.000 |
| No. of measured, independent and observed [ | 14284, 3736, 2968 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.693 |
| Refinement | |
|
| 0.062, 0.211, 1.10 |
| No. of reflections | 3736 |
| No. of parameters | 170 |
| No. of restraints | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.73, −0.56 |
Computer programs: PAL BL2D-SMDC Program (Shin et al., 2016 ▸), HKL3000sm (Otwinowski & Minor, 1997 ▸), SHELXT2018 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), DIAMOND 4 (Putz & Brandenburg, 2014 ▸) and publCIF (Westrip, 2010 ▸).
| C22H46N42+·2NO3−·2H2O | |
| Monoclinic, | Synchrotron radiation, λ = 0.610 Å |
| Cell parameters from 46866 reflections | |
| θ = 0.4–33.7° | |
| µ = 0.07 mm−1 | |
| β = 96.46 (3)° | |
| Block, colorless | |
| 0.13 × 0.09 × 0.05 mm |
| Rayonix MX225HS CCD area detector diffractometer | 2968 reflections with |
| Radiation source: PLSII 2D bending magnet | |
| ω scan | θmax = 25.0°, θmin = 2.0° |
| Absorption correction: empirical (using intensity measurements) ( | |
| 14284 measured reflections | |
| 3736 independent reflections |
| Refinement on | 4 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3736 reflections | Δρmax = 0.73 e Å−3 |
| 170 parameters | Δρmin = −0.56 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| N1 | 0.51219 (14) | 0.59626 (8) | 0.36407 (11) | 0.0308 (3) | |
| H1N | 0.473300 | 0.634200 | 0.422800 | 0.037* | |
| N2 | 0.28123 (13) | 0.47313 (7) | 0.42499 (11) | 0.0278 (3) | |
| H2AN | 0.385711 | 0.476834 | 0.431710 | 0.033* | |
| H2BN | 0.246719 | 0.513235 | 0.475356 | 0.033* | |
| C1 | 0.76020 (15) | 0.60393 (9) | 0.51374 (13) | 0.0286 (3) | |
| H1 | 0.716885 | 0.647557 | 0.566781 | 0.034* | |
| C2 | 0.93544 (17) | 0.61843 (10) | 0.51640 (16) | 0.0365 (3) | |
| H2A | 0.983763 | 0.617356 | 0.612413 | 0.044* | |
| H2B | 0.981148 | 0.575002 | 0.466503 | 0.044* | |
| C3 | 0.97155 (18) | 0.69835 (10) | 0.45121 (17) | 0.0386 (4) | |
| H3A | 0.936038 | 0.742285 | 0.506664 | 0.046* | |
| H3B | 1.084368 | 0.703693 | 0.450342 | 0.046* | |
| C4 | 0.89135 (18) | 0.70410 (10) | 0.30389 (15) | 0.0373 (3) | |
| H4A | 0.935358 | 0.663904 | 0.245983 | 0.045* | |
| H4B | 0.910323 | 0.757161 | 0.266013 | 0.045* | |
| C5 | 0.71640 (17) | 0.69051 (9) | 0.30041 (15) | 0.0342 (3) | |
| H5A | 0.667680 | 0.692382 | 0.204553 | 0.041* | |
| H5B | 0.670830 | 0.733224 | 0.352056 | 0.041* | |
| C6 | 0.68403 (16) | 0.60924 (9) | 0.36398 (13) | 0.0296 (3) | |
| H6 | 0.726833 | 0.566354 | 0.308993 | 0.035* | |
| C7 | 0.42136 (18) | 0.59147 (10) | 0.22379 (14) | 0.0353 (3) | |
| H7A | 0.467359 | 0.550519 | 0.168718 | 0.042* | |
| H7B | 0.427202 | 0.643030 | 0.176434 | 0.042* | |
| C8 | 0.25211 (17) | 0.57083 (9) | 0.23440 (14) | 0.0337 (3) | |
| H8A | 0.192762 | 0.580870 | 0.144215 | 0.040* | |
| H8B | 0.212715 | 0.607652 | 0.300777 | 0.040* | |
| C9 | 0.21823 (17) | 0.48504 (9) | 0.27811 (13) | 0.0314 (3) | |
| H9 | 0.103745 | 0.478672 | 0.271539 | 0.038* | |
| C10 | 0.2802 (3) | 0.42191 (11) | 0.18588 (16) | 0.0471 (4) | |
| H10A | 0.393272 | 0.428242 | 0.189202 | 0.056* | |
| H10B | 0.259978 | 0.368749 | 0.222744 | 0.056* | |
| C11 | 0.2090 (4) | 0.42595 (16) | 0.0363 (2) | 0.0792 (8) | |
| H11A | 0.096417 | 0.427628 | 0.032597 | 0.119* | |
| H11B | 0.239639 | 0.378996 | −0.012820 | 0.119* | |
| H11C | 0.245453 | 0.473817 | −0.006600 | 0.119* | |
| N3 | 0.2912 (2) | 0.63006 (12) | 0.76865 (18) | 0.0581 (5) | |
| O1 | 0.3086 (2) | 0.58294 (10) | 0.6746 (2) | 0.0812 (6) | |
| O2 | 0.2872 (2) | 0.70307 (10) | 0.74420 (17) | 0.0696 (5) | |
| O3 | 0.2875 (5) | 0.6094 (2) | 0.8868 (3) | 0.1636 (16) | |
| O4 | 0.42576 (16) | 0.72874 (9) | 0.50503 (14) | 0.0501 (3) | |
| H1O | 0.373 (3) | 0.7221 (16) | 0.5829 (17) | 0.075* | |
| H2O | 0.366 (3) | 0.7605 (14) | 0.439 (2) | 0.075* |
| N1 | 0.0327 (6) | 0.0418 (7) | 0.0171 (5) | −0.0017 (5) | −0.0003 (4) | 0.0035 (4) |
| N2 | 0.0303 (6) | 0.0363 (6) | 0.0163 (5) | −0.0001 (4) | −0.0003 (4) | 0.0006 (4) |
| C1 | 0.0300 (6) | 0.0370 (7) | 0.0185 (6) | −0.0006 (5) | 0.0012 (5) | 0.0007 (5) |
| C2 | 0.0303 (7) | 0.0486 (9) | 0.0302 (7) | −0.0013 (6) | 0.0012 (5) | 0.0050 (6) |
| C3 | 0.0361 (7) | 0.0496 (9) | 0.0305 (7) | −0.0078 (6) | 0.0055 (6) | 0.0016 (6) |
| C4 | 0.0380 (7) | 0.0482 (9) | 0.0269 (7) | −0.0029 (6) | 0.0090 (6) | 0.0038 (6) |
| C5 | 0.0368 (7) | 0.0423 (8) | 0.0240 (6) | −0.0006 (5) | 0.0048 (5) | 0.0065 (5) |
| C6 | 0.0317 (6) | 0.0389 (7) | 0.0180 (6) | 0.0007 (5) | 0.0024 (5) | 0.0015 (5) |
| C7 | 0.0393 (8) | 0.0476 (8) | 0.0176 (6) | −0.0062 (6) | −0.0027 (5) | 0.0057 (5) |
| C8 | 0.0344 (7) | 0.0437 (8) | 0.0213 (6) | 0.0024 (5) | −0.0040 (5) | 0.0046 (5) |
| C9 | 0.0329 (7) | 0.0430 (8) | 0.0172 (6) | −0.0033 (5) | −0.0013 (5) | 0.0010 (5) |
| C10 | 0.0721 (12) | 0.0461 (10) | 0.0240 (7) | −0.0041 (8) | 0.0097 (7) | −0.0044 (6) |
| C11 | 0.141 (3) | 0.0743 (15) | 0.0214 (8) | −0.0135 (15) | 0.0046 (11) | −0.0093 (9) |
| N3 | 0.0674 (11) | 0.0633 (11) | 0.0418 (9) | −0.0045 (8) | −0.0025 (8) | 0.0016 (7) |
| O1 | 0.1056 (14) | 0.0553 (10) | 0.0739 (12) | 0.0074 (8) | −0.0284 (10) | −0.0228 (8) |
| O2 | 0.1060 (14) | 0.0545 (9) | 0.0509 (9) | 0.0048 (8) | 0.0204 (9) | −0.0098 (6) |
| O3 | 0.285 (5) | 0.140 (3) | 0.0760 (18) | 0.010 (3) | 0.063 (2) | 0.0501 (17) |
| O4 | 0.0555 (8) | 0.0574 (8) | 0.0384 (7) | 0.0082 (6) | 0.0088 (6) | −0.0009 (5) |
| N1—C7 | 1.4987 (17) | C5—H5B | 0.9800 |
| N1—C6 | 1.5009 (18) | C6—H6 | 0.9900 |
| N1—H1N | 0.94 | C7—C8 | 1.517 (2) |
| N2—C1i | 1.4784 (18) | C7—H7A | 0.9800 |
| N2—C9 | 1.4850 (16) | C7—H7B | 0.9800 |
| N2—H2AN | 0.9000 | C8—C9 | 1.531 (2) |
| N2—H2BN | 0.9000 | C8—H8A | 0.9800 |
| C1—C2 | 1.5309 (19) | C8—H8B | 0.9800 |
| C1—C6 | 1.5330 (18) | C9—C10 | 1.520 (2) |
| C1—H1 | 0.9900 | C9—H9 | 0.9900 |
| C2—C3 | 1.524 (2) | C10—C11 | 1.517 (3) |
| C2—H2A | 0.9800 | C10—H10A | 0.9800 |
| C2—H2B | 0.9800 | C10—H10B | 0.9800 |
| C3—C4 | 1.524 (2) | C11—H11A | 0.9700 |
| C3—H3A | 0.9800 | C11—H11B | 0.9700 |
| C3—H3B | 0.9800 | C11—H11C | 0.9700 |
| C4—C5 | 1.525 (2) | N3—O3 | 1.204 (3) |
| C4—H4A | 0.9800 | N3—O1 | 1.229 (3) |
| C4—H4B | 0.9800 | N3—O2 | 1.241 (2) |
| C5—C6 | 1.529 (2) | O4—H1O | 0.937 (10) |
| C5—H5A | 0.9800 | O4—H2O | 0.941 (9) |
| C7—N1—C6 | 115.09 (11) | N1—C6—C1 | 108.07 (11) |
| C7—N1—H1N | 114 | C5—C6—C1 | 110.95 (12) |
| C6—N1—H1N | 109 | N1—C6—H6 | 109.0 |
| C1i—N2—C9 | 115.19 (10) | C5—C6—H6 | 109.0 |
| C1i—N2—H2AN | 108.5 | C1—C6—H6 | 109.0 |
| C9—N2—H2AN | 108.5 | N1—C7—C8 | 111.11 (11) |
| C1i—N2—H2BN | 108.5 | N1—C7—H7A | 109.4 |
| C9—N2—H2BN | 108.5 | C8—C7—H7A | 109.4 |
| H2AN—N2—H2BN | 107.5 | N1—C7—H7B | 109.4 |
| N2i—C1—C2 | 114.50 (12) | C8—C7—H7B | 109.4 |
| N2i—C1—C6 | 109.65 (11) | H7A—C7—H7B | 108.0 |
| C2—C1—C6 | 108.97 (11) | C7—C8—C9 | 116.55 (12) |
| N2i—C1—H1 | 107.8 | C7—C8—H8A | 108.2 |
| C2—C1—H1 | 107.8 | C9—C8—H8A | 108.2 |
| C6—C1—H1 | 107.8 | C7—C8—H8B | 108.2 |
| C3—C2—C1 | 112.32 (12) | C9—C8—H8B | 108.2 |
| C3—C2—H2A | 109.1 | H8A—C8—H8B | 107.3 |
| C1—C2—H2A | 109.1 | N2—C9—C10 | 111.14 (12) |
| C3—C2—H2B | 109.1 | N2—C9—C8 | 109.38 (11) |
| C1—C2—H2B | 109.1 | C10—C9—C8 | 113.13 (13) |
| H2A—C2—H2B | 107.9 | N2—C9—H9 | 107.7 |
| C4—C3—C2 | 110.74 (13) | C10—C9—H9 | 107.7 |
| C4—C3—H3A | 109.5 | C8—C9—H9 | 107.7 |
| C2—C3—H3A | 109.5 | C11—C10—C9 | 113.86 (17) |
| C4—C3—H3B | 109.5 | C11—C10—H10A | 108.8 |
| C2—C3—H3B | 109.5 | C9—C10—H10A | 108.8 |
| H3A—C3—H3B | 108.1 | C11—C10—H10B | 108.8 |
| C3—C4—C5 | 110.87 (12) | C9—C10—H10B | 108.8 |
| C3—C4—H4A | 109.5 | H10A—C10—H10B | 107.7 |
| C5—C4—H4A | 109.5 | C10—C11—H11A | 109.5 |
| C3—C4—H4B | 109.5 | C10—C11—H11B | 109.5 |
| C5—C4—H4B | 109.5 | H11A—C11—H11B | 109.5 |
| H4A—C4—H4B | 108.1 | C10—C11—H11C | 109.5 |
| C4—C5—C6 | 110.41 (12) | H11A—C11—H11C | 109.5 |
| C4—C5—H5A | 109.6 | H11B—C11—H11C | 109.5 |
| C6—C5—H5A | 109.6 | O3—N3—O1 | 123.1 (3) |
| C4—C5—H5B | 109.6 | O3—N3—O2 | 117.4 (2) |
| C6—C5—H5B | 109.6 | O1—N3—O2 | 119.23 (19) |
| H5A—C5—H5B | 108.1 | H1O—O4—H2O | 109.8 (18) |
| N1—C6—C5 | 110.75 (11) | ||
| N2i—C1—C2—C3 | 179.62 (12) | N2i—C1—C6—C5 | 176.50 (11) |
| C6—C1—C2—C3 | 56.43 (16) | C2—C1—C6—C5 | −57.46 (15) |
| C1—C2—C3—C4 | −55.92 (17) | C6—N1—C7—C8 | 174.85 (12) |
| C2—C3—C4—C5 | 55.43 (18) | N1—C7—C8—C9 | −71.31 (16) |
| C3—C4—C5—C6 | −57.05 (17) | C1i—N2—C9—C10 | −61.66 (16) |
| C7—N1—C6—C5 | 64.03 (15) | C1i—N2—C9—C8 | 172.72 (11) |
| C7—N1—C6—C1 | −174.25 (12) | C7—C8—C9—N2 | 68.87 (16) |
| C4—C5—C6—N1 | 178.64 (11) | C7—C8—C9—C10 | −55.60 (17) |
| C4—C5—C6—C1 | 58.63 (16) | N2—C9—C10—C11 | 174.71 (16) |
| N2i—C1—C6—N1 | 54.91 (14) | C8—C9—C10—C11 | −61.8 (2) |
| C2—C1—C6—N1 | −179.05 (12) |
| H··· | ||||
| N2—H2 | 0.90 | 2.40 | 2.9703 (18) | 121 |
| N2—H2 | 0.90 | 2.41 | 2.8141 (17) | 107 |
| N1—H1 | 0.94 | 1.84 | 2.7493 (19) | 163 |
| N2—H2 | 0.90 | 2.40 | 2.9703 (18) | 121 |
| N2—H2 | 0.90 | 2.27 | 3.031 (2) | 142 |
| O4—H1 | 0.94 (1) | 2.57 (2) | 3.169 (3) | 122 (2) |
| O4—H1 | 0.94 (1) | 1.84 (1) | 2.768 (2) | 174 (2) |
| O4—H2 | 0.94 (1) | 2.04 (1) | 2.914 (2) | 155 (2) |
| O4—H2 | 0.94 (1) | 2.31 (2) | 3.120 (4) | 144 (2) |