Literature DB >> 24454070

3,14-Diethyl-2,13-di-aza-6,17-diazonia-tri-cyclo-[16.4.0.0(7,12)]docosane dichloride tetra-hydrate from synchrotron radiation.

Dohyun Moon1, Md Abdus Subhan2, Jong-Ha Choi3.   

Abstract

The asymmetric unit of title hydrated salt, C22H46N4 (2+)·2Cl(-)·4H2O, comprises half a centrosymmetric dication, one Cl(-) anion and two water mol-ecules of crystallization. The structure determination reveals that protonation has occurred at diagonally opposite amine N atoms, and that the dication features intra-molecular N-H⋯N hydrogen bonds. In the crystal, a three-dimensional artchitecture is formed by O-H⋯Cl/N and N-H⋯Cl/O hydrogen bonds.

Entities:  

Year:  2013        PMID: 24454070      PMCID: PMC3884294          DOI: 10.1107/S1600536813027232

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the coordination chemistry of tetra­aza­macrocycles, see: Choi et al. (2010 ▶); De Clercq (2010 ▶). For the synthesis of the precursor macrocycle, see: Lim et al. (2006 ▶). For related structures, see: Choi et al. (2006 ▶, 2011 ▶).

Experimental

Crystal data

C22H46N4 2+·2Cl−·4H2O M = 509.59 Monoclinic, a = 22.122 (4) Å b = 13.616 (3) Å c = 10.565 (2) Å β = 115.23 (3)° V = 2878.5 (10) Å3 Z = 4 Synchrotron radiation λ = 0.72000 Å μ = 0.27 mm−1 T = 95 K 0.31 × 0.28 × 0.25 mm

Data collection

ADSC Q210 CCD area-detector diffractometer Absorption correction: empirical (using intensity measurements) (HKL-3000 ; Otwinowski & Minor, 1997 ▶) T min = 0.922, T max = 0.937 13046 measured reflections 3663 independent reflections 3446 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.079 S = 1.05 3663 reflections 178 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.35 e Å−3 Data collection: PAL ADSC Quantum-210 ADX (Arvai & Nielsen, 1983 ▶); cell refinement: HKL3000sm (Otwinowski & Minor, 1997 ▶); data reduction: HKL3000sm; program(s) used to solve structure: SHELXL2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013; molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813027232/tk5261sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813027232/tk5261Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813027232/tk5261Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H46N42+·2Cl·4H2OF(000) = 1120
Mr = 509.59Dx = 1.176 Mg m3
Monoclinic, C2/cSynchrotron radiation, λ = 0.72000 Å
a = 22.122 (4) ÅCell parameters from 31113 reflections
b = 13.616 (3) Åθ = 1.3–66.4°
c = 10.565 (2) ŵ = 0.27 mm1
β = 115.23 (3)°T = 95 K
V = 2878.5 (10) Å3Block, colourless
Z = 40.31 × 0.28 × 0.25 mm
ADSC Q210 CCD area-detector diffractometer3663 independent reflections
Radiation source: PLSII 2D bending magnet3446 reflections with I > 2σ(I)
Si(111) double crystal monochromatorRint = 0.028
ω scanθmax = 29.0°, θmin = 1.8°
Absorption correction: empirical (using intensity measurements) (HKL-3000 SCALEPACK; Otwinowski & Minor, 1997)h = −29→29
Tmin = 0.922, Tmax = 0.937k = −18→18
13046 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0412P)2 + 2.157P] where P = (Fo2 + 2Fc2)/3
3663 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.24338 (3)0.30241 (5)0.30460 (7)0.00545 (13)
H1N10.2484 (6)0.3678 (10)0.3234 (13)0.013 (3)*
H2N10.2370 (6)0.2756 (9)0.3766 (13)0.014 (3)*
N20.34493 (3)0.23871 (5)0.55886 (7)0.00584 (14)
H1N20.3460 (6)0.1738 (10)0.5533 (13)0.012 (3)*
C10.18207 (4)0.28405 (6)0.17163 (8)0.00738 (15)
H1A0.18310.21600.13980.009*
H1B0.18190.32930.09810.009*
C20.30641 (4)0.26138 (6)0.30527 (8)0.00612 (15)
H20.30040.18910.28720.007*
C30.32229 (4)0.30822 (7)0.19167 (8)0.01049 (16)
H3A0.32890.37980.20830.013*
H3B0.28440.29800.09900.013*
C40.38574 (4)0.26195 (8)0.19333 (9)0.01451 (18)
H4A0.37750.19160.16800.017*
H4B0.39710.29470.12260.017*
C50.44453 (4)0.27145 (8)0.33736 (9)0.01465 (18)
H5A0.48360.23580.33770.018*
H5B0.45690.34150.35720.018*
C60.42661 (4)0.22968 (7)0.45105 (9)0.01216 (17)
H6A0.46450.24030.54360.015*
H6B0.41940.15800.43700.015*
C70.36367 (4)0.27744 (6)0.44987 (8)0.00632 (15)
H70.37180.34970.46510.008*
C80.39051 (4)0.27036 (6)0.70259 (8)0.00656 (15)
H80.43750.26350.71340.008*
C90.38146 (4)0.20090 (6)0.80803 (8)0.00776 (15)
H9A0.38200.13240.77700.009*
H9B0.42030.20890.89980.009*
C100.37854 (4)0.37876 (6)0.72406 (9)0.01032 (16)
H10A0.38250.41820.64920.012*
H10B0.33240.38650.71530.012*
C110.42749 (5)0.41859 (7)0.86611 (10)0.01776 (19)
H11A0.42270.38150.94080.027*
H11B0.41790.48810.87340.027*
H11C0.47330.41170.87530.027*
Cl10.256487 (11)0.526092 (15)0.35905 (2)0.01378 (8)
O1W0.16965 (4)0.51673 (5)0.02378 (8)0.01737 (15)
H1O10.1926 (9)0.5195 (12)0.110 (2)0.038 (4)*
H2O10.1952 (8)0.5022 (12)−0.0111 (17)0.033 (4)*
O2W0.52804 (5)0.02912 (8)0.40229 (12)0.0354 (2)
H1O20.5693 (11)0.0172 (13)0.4382 (19)0.044 (5)*
H2O20.512 (2)0.016 (3)0.328 (5)0.062 (14)*0.50
H3O20.5140 (19)0.015 (3)0.457 (4)0.041 (10)*0.50
U11U22U33U12U13U23
N10.0030 (3)0.0080 (3)0.0048 (3)−0.0006 (2)0.0011 (2)−0.0001 (2)
N20.0045 (3)0.0083 (3)0.0045 (3)−0.0011 (2)0.0017 (2)−0.0001 (2)
C10.0037 (3)0.0124 (4)0.0044 (3)−0.0012 (3)0.0001 (3)0.0005 (3)
C20.0030 (3)0.0095 (3)0.0061 (3)0.0000 (3)0.0021 (3)−0.0009 (3)
C30.0072 (4)0.0190 (4)0.0057 (3)−0.0013 (3)0.0032 (3)0.0007 (3)
C40.0084 (4)0.0291 (5)0.0080 (4)−0.0005 (3)0.0054 (3)−0.0023 (3)
C50.0058 (4)0.0308 (5)0.0093 (4)−0.0008 (3)0.0050 (3)−0.0001 (3)
C60.0050 (3)0.0232 (4)0.0093 (4)0.0032 (3)0.0040 (3)0.0019 (3)
C70.0032 (3)0.0109 (4)0.0049 (3)−0.0011 (3)0.0018 (3)0.0000 (3)
C80.0036 (3)0.0099 (4)0.0053 (3)−0.0008 (3)0.0010 (3)−0.0002 (3)
C90.0041 (3)0.0111 (4)0.0069 (3)0.0010 (3)0.0012 (3)0.0023 (3)
C100.0131 (4)0.0091 (4)0.0081 (3)−0.0011 (3)0.0039 (3)−0.0007 (3)
C110.0209 (5)0.0151 (4)0.0129 (4)−0.0049 (4)0.0030 (3)−0.0055 (3)
Cl10.01970 (12)0.00834 (11)0.01508 (12)−0.00076 (7)0.00912 (9)0.00064 (7)
O1W0.0187 (3)0.0182 (3)0.0168 (3)0.0023 (3)0.0092 (3)0.0010 (3)
O2W0.0226 (5)0.0488 (6)0.0330 (5)0.0101 (4)0.0101 (4)0.0081 (4)
N1—C21.4995 (10)C6—C71.5320 (11)
N1—C11.5003 (12)C6—H6A0.9900
N1—H1N10.909 (13)C6—H6B0.9900
N1—H2N10.907 (13)C7—H71.0000
N2—C71.4774 (10)C8—C101.5333 (12)
N2—C81.4842 (11)C8—C91.5381 (11)
N2—H1N20.887 (13)C8—H81.0000
C1—C9i1.5234 (11)C9—C1i1.5233 (11)
C1—H1A0.9900C9—H9A0.9900
C1—H1B0.9900C9—H9B0.9900
C2—C31.5264 (11)C10—C111.5276 (13)
C2—C71.5285 (12)C10—H10A0.9900
C2—H21.0000C10—H10B0.9900
C3—C41.5318 (12)C11—H11A0.9800
C3—H3A0.9900C11—H11B0.9800
C3—H3B0.9900C11—H11C0.9800
C4—C51.5286 (13)O1W—H1O10.833 (19)
C4—H4A0.9900O1W—H2O10.820 (18)
C4—H4B0.9900O2W—H1O20.84 (2)
C5—C61.5262 (12)O2W—H2O20.73 (4)
C5—H5A0.9900O2W—H3O20.78 (4)
C5—H5B0.9900
C2—N1—C1114.20 (6)C5—C6—H6A109.2
C2—N1—H1N1109.7 (8)C7—C6—H6A109.2
C1—N1—H1N1110.2 (8)C5—C6—H6B109.2
C2—N1—H2N1108.8 (8)C7—C6—H6B109.2
C1—N1—H2N1108.5 (8)H6A—C6—H6B107.9
H1N1—N1—H2N1105.0 (11)N2—C7—C2109.85 (6)
C7—N2—C8113.56 (6)N2—C7—C6113.46 (7)
C7—N2—H1N2106.2 (8)C2—C7—C6108.08 (7)
C8—N2—H1N2109.4 (8)N2—C7—H7108.4
N1—C1—C9i111.44 (7)C2—C7—H7108.4
N1—C1—H1A109.3C6—C7—H7108.4
C9i—C1—H1A109.3N2—C8—C10110.24 (6)
N1—C1—H1B109.3N2—C8—C9108.72 (6)
C9i—C1—H1B109.3C10—C8—C9113.61 (7)
H1A—C1—H1B108.0N2—C8—H8108.0
N1—C2—C3111.46 (7)C10—C8—H8108.0
N1—C2—C7108.91 (7)C9—C8—H8108.0
C3—C2—C7110.83 (7)C1i—C9—C8115.61 (7)
N1—C2—H2108.5C1i—C9—H9A108.4
C3—C2—H2108.5C8—C9—H9A108.4
C7—C2—H2108.5C1i—C9—H9B108.4
C2—C3—C4109.63 (7)C8—C9—H9B108.4
C2—C3—H3A109.7H9A—C9—H9B107.4
C4—C3—H3A109.7C11—C10—C8113.10 (7)
C2—C3—H3B109.7C11—C10—H10A109.0
C4—C3—H3B109.7C8—C10—H10A109.0
H3A—C3—H3B108.2C11—C10—H10B109.0
C5—C4—C3111.30 (7)C8—C10—H10B109.0
C5—C4—H4A109.4H10A—C10—H10B107.8
C3—C4—H4A109.4C10—C11—H11A109.5
C5—C4—H4B109.4C10—C11—H11B109.5
C3—C4—H4B109.4H11A—C11—H11B109.5
H4A—C4—H4B108.0C10—C11—H11C109.5
C6—C5—C4110.83 (7)H11A—C11—H11C109.5
C6—C5—H5A109.5H11B—C11—H11C109.5
C4—C5—H5A109.5H1O1—O1W—H2O1106.6 (16)
C6—C5—H5B109.5H1O2—O2W—H2O2111 (4)
C4—C5—H5B109.5H1O2—O2W—H3O2108 (3)
H5A—C5—H5B108.1H2O2—O2W—H3O2124 (5)
C5—C6—C7112.06 (7)
C2—N1—C1—C9i162.93 (7)C3—C2—C7—N2175.38 (6)
C1—N1—C2—C362.08 (9)N1—C2—C7—C6176.69 (7)
C1—N1—C2—C7−175.33 (6)C3—C2—C7—C6−60.34 (9)
N1—C2—C3—C4−178.28 (7)C5—C6—C7—N2−179.94 (7)
C7—C2—C3—C460.24 (9)C5—C6—C7—C257.97 (9)
C2—C3—C4—C5−56.36 (10)C7—N2—C8—C1073.59 (8)
C3—C4—C5—C654.06 (11)C7—N2—C8—C9−161.26 (6)
C4—C5—C6—C7−55.52 (11)N2—C8—C9—C1i−75.02 (9)
C8—N2—C7—C2−167.13 (6)C10—C8—C9—C1i48.13 (9)
C8—N2—C7—C671.78 (9)N2—C8—C10—C11−175.53 (7)
N1—C2—C7—N252.42 (8)C9—C8—C10—C1162.15 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···Cl10.909 (13)2.182 (14)3.0900 (9)177.3 (12)
N1—H2N1···N2i0.907 (13)2.200 (13)2.9348 (11)137.6 (10)
N2—H1N2···O1Wii0.887 (13)2.262 (13)3.1242 (12)164.1 (11)
O1W—H1O1···Cl10.833 (19)2.400 (19)3.2329 (14)178.6 (17)
O1W—H2O1···Cl1iii0.820 (18)2.335 (18)3.1479 (10)171.1 (15)
O2W—H1O2···O1Wiv0.84 (2)2.06 (2)2.9021 (15)178.1 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯Cl10.909 (13)2.182 (14)3.0900 (9)177.3 (12)
N1—H2N1⋯N2i 0.907 (13)2.200 (13)2.9348 (11)137.6 (10)
N2—H1N2⋯O1W ii 0.887 (13)2.262 (13)3.1242 (12)164.1 (11)
O1W—H1O1⋯Cl10.833 (19)2.400 (19)3.2329 (14)178.6 (17)
O1W—H2O1⋯Cl1iii 0.820 (18)2.335 (18)3.1479 (10)171.1 (15)
O2W—H1O2⋯O1W iv 0.84 (2)2.06 (2)2.9021 (15)178.1 (18)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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